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OPENSEQ.org
L04 - S15
UniProt: Q5SHN9 - Q5SJ76
Length: 299
Sequences: 1367
Seq/Len: 4.73
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2dF 3v2eO 3v2fFContact Map
2j002j00O 2j01F 2j02O 2j03FContact Map
4juw4juwO 4juxFContact Map
4kix4kixE 4kiyO 4kizE 4kj0O 4kj1E 4kj2O 4kj3E 4kj4OContact Map
4kj54kj5E 4kj6O 4kj7E 4kj8O 4kj9E 4kjaO 4kjbE 4kjcOContact Map
3ohc3ohcO 3ohdO 3ohjF 3ohkFContact Map
3knh3knhO 3kniF 3knjO 3knkFContact Map
3uz63uz6R 3uz7R 3uz8F 3uz9FContact Map
3oge3ogeO 3ogyO 3oh5F 3oh7FContact Map
3uyd3uydR 3uyeF 3uyfR 3uygFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
170_L 59_M 0.85 0.00
81_P 50_H 0.76 0.00
41_L 35_R 0.75 0.00
21_A 64_R 0.71 0.00
199_W 60_V 0.70 0.00
145_E 52_S 0.69 0.00
102_P 50_H 0.69 0.00
164_R 83_E 0.68 0.00
14_P 31_L 0.66 0.00
60_S 52_S 0.66 0.00
106_R 31_L 0.65 0.00
88_V 89_G 0.65 0.00
195_D 48_K 0.64 0.00
80_A 48_K 0.64 0.00
157_V 19_P 0.62 0.00
49_A 3_I 0.62 0.00
199_W 64_R 0.62 0.00
128_A 20_G 0.62 0.00
34_W 35_R 0.61 0.00
97_Y 8_K 0.61 0.00
122_K 15_F 0.61 0.00
111_A 37_N 0.60 0.00
144_K 45_V 0.60 0.00
186_I 84_K 0.59 0.00
170_L 44_K 0.59 0.00
44_R 65_R 0.58 0.00
95_R 21_D 0.58 0.00
193_V 66_L 0.58 0.00
92_P 61_G 0.58 0.00
166_A 18_F 0.58 0.00
201_V 64_R 0.57 0.00
190_E 15_F 0.57 0.00
138_E 45_V 0.57 0.00
137_K 70_L 0.56 0.00
33_L 59_M 0.56 0.00
37_V 26_E 0.56 0.00
144_K 9_Q 0.56 0.00
175_T 79_R 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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