May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L04 - L29
UniProt: Q5SHN9 - Q5SHP6
Length: 282
Sequences: 1157
Seq/Len: 4.38
I_Prob: 0.08
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoCVContact Map
1vq81vq8CVContact Map
1vqp1vqpCVContact Map
1vqm1vqmCVContact Map
1vql1vqlCVContact Map
1vqk1vqkCVContact Map
1yhq1yhqCVContact Map
1s721s72CVContact Map
1vq91vq9CVContact Map
1vqn1vqnCVContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
102_P 42_G 1.10 0.08
51_T 18_P 0.85 0.03
157_V 42_G 0.74 0.02
185_D 37_F 0.73 0.02
16_G 29_K 0.72 0.02
10_P 27_E 0.69 0.02
46_R 68_R 0.66 0.02
53_T 25_V 0.66 0.02
69_H 41_I 0.65 0.02
85_G 54_K 0.63 0.01
77_D 32_L 0.63 0.01
184_Y 29_K 0.62 0.01
109_G 16_L 0.62 0.01
32_L 54_K 0.61 0.01
62_R 20_E 0.61 0.01
115_A 25_V 0.60 0.01
190_E 50_I 0.60 0.01
186_I 30_R 0.60 0.01
195_D 51_R 0.59 0.01
170_L 16_L 0.59 0.01
154_V 15_K 0.58 0.01
102_P 65_N 0.58 0.01
156_L 34_E 0.58 0.01
199_W 65_N 0.58 0.01
8_Q 55_R 0.57 0.01
133_N 42_G 0.57 0.01
193_V 55_R 0.57 0.01
154_V 14_R 0.57 0.01
102_P 69_R 0.57 0.01
65_W 22_E 0.56 0.01
60_S 32_L 0.56 0.01
72_R 42_G 0.56 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.347 seconds.