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OPENSEQ.org
L04 - S19
UniProt: Q5SHN9 - Q5SHP2
Length: 303
Sequences: 1576
Seq/Len: 5.43
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cS 3v2dF 3v2eS 3v2fFContact Map
2j002j00S 2j01F 2j02S 2j03FContact Map
4juw4juwS 4juxFContact Map
4kix4kixE 4kiyS 4kizE 4kj0S 4kj1E 4kj2S 4kj3E 4kj4SContact Map
4kj54kj5E 4kj6S 4kj7E 4kj8S 4kj9E 4kjaS 4kjbE 4kjcSContact Map
3ohc3ohcS 3ohdS 3ohjF 3ohkFContact Map
3knh3knhS 3kniF 3knjS 3knkFContact Map
3uz63uz6V 3uz7V 3uz8F 3uz9FContact Map
3oge3ogeS 3ogyS 3oh5F 3oh7FContact Map
3uyd3uydV 3uyeF 3uyfV 3uygFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
46_R 65_N 0.91 0.01
28_I 52_Y 0.78 0.01
61_G 65_N 0.77 0.01
91_G 76_P 0.75 0.01
31_H 44_M 0.73 0.01
50_S 44_M 0.72 0.00
199_W 16_L 0.70 0.00
43_K 2_P 0.70 0.00
55_G 81_R 0.69 0.00
35_E 52_Y 0.69 0.00
170_L 32_K 0.69 0.00
21_A 21_E 0.68 0.00
22_A 49_I 0.65 0.00
139_F 75_A 0.64 0.00
66_P 2_P 0.64 0.00
49_A 53_N 0.61 0.00
62_R 21_E 0.61 0.00
136_T 78_R 0.60 0.00
81_P 46_G 0.60 0.00
199_W 22_L 0.60 0.00
10_P 62_I 0.60 0.00
167_A 63_T 0.59 0.00
112_M 69_H 0.59 0.00
156_L 77_T 0.59 0.00
77_D 41_V 0.59 0.00
102_P 53_N 0.59 0.00
20_L 57_H 0.59 0.00
9_I 29_R 0.59 0.00
154_V 45_V 0.58 0.00
31_H 81_R 0.58 0.00
53_T 85_K 0.58 0.00
194_M 60_V 0.57 0.00
66_P 63_T 0.57 0.00
36_V 88_K 0.57 0.00
58_A 60_V 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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