OPENSEQ.org
L04 - S10
UniProt: Q5SHN9 - Q5SHN7
Length: 315
Sequences: 1407
Seq/Len: 4.69
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2dF 3v2eJ 3v2fFContact Map
2j002j00J 2j01F 2j02J 2j03FContact Map
4juw4juwJ 4juxFContact Map
4kix4kixE 4kiyJ 4kizE 4kj0J 4kj1E 4kj2J 4kj3E 4kj4JContact Map
4kj54kj5E 4kj6J 4kj7E 4kj8J 4kj9E 4kjaJ 4kjbE 4kjcJContact Map
3knh3knhJ 3kniF 3knjJ 3knkFContact Map
3ohc3ohcJ 3ohdJ 3ohjF 3ohkFContact Map
3uz63uz6M 3uz7M 3uz8F 3uz9FContact Map
3u5b3u5cU 3u5eC 3u5gU 3u5iCContact Map
3oge3ogeJ 3ogyJ 3oh5F 3oh7FContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
195_D 2_P 0.89 0.01
109_G 69_N 0.87 0.01
75_H 56_H 0.86 0.00
31_H 86_M 0.85 0.00
106_R 16_L 0.84 0.00
82_I 55_K 0.80 0.00
88_V 58_D 0.79 0.00
33_L 28_R 0.78 0.00
139_F 79_R 0.78 0.00
118_A 94_V 0.76 0.00
82_I 56_H 0.74 0.00
9_I 43_R 0.73 0.00
143_A 53_P 0.73 0.00
139_F 11_F 0.72 0.00
93_K 55_K 0.70 0.00
167_A 35_S 0.69 0.00
24_L 69_N 0.69 0.00
156_L 47_F 0.69 0.00
17_R 26_A 0.68 0.00
59_Y 11_F 0.67 0.00
102_P 16_L 0.66 0.00
34_W 26_A 0.64 0.00
72_R 95_E 0.64 0.00
62_R 30_S 0.64 0.00
165_R 15_T 0.63 0.00
23_D 43_R 0.62 0.00
55_G 53_P 0.62 0.00
189_T 44_V 0.62 0.00
90_F 80_K 0.62 0.00
69_H 82_I 0.62 0.00
62_R 21_Q 0.62 0.00
157_V 33_Q 0.62 0.00
142_W 46_R 0.61 0.00
121_G 49_V 0.61 0.00
166_A 6_I 0.61 0.00
18_R 25_E 0.61 0.00
41_L 77_P 0.61 0.00
10_P 65_L 0.60 0.00
174_V 79_R 0.60 0.00
102_P 95_E 0.59 0.00
206_I 47_F 0.59 0.00
46_R 72_V 0.59 0.00
47_G 6_I 0.58 0.00
161_E 33_Q 0.58 0.00
11_V 45_R 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 0.0142 seconds.