OPENSEQ.org
L04 - S12
UniProt: Q5SHN9 - Q5SHN3
Length: 342
Sequences: 1278
Seq/Len: 3.93
I_Prob: 0.06
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2dF 3v2eL 3v2fFContact Map
2j002j00L 2j01F 2j02L 2j03FContact Map
4juw4juwL 4juxFContact Map
4kix4kixE 4kiyL 4kizE 4kj0L 4kj1E 4kj2L 4kj3E 4kj4LContact Map
4kj54kj5E 4kj6L 4kj7E 4kj8L 4kj9E 4kjaL 4kjbE 4kjcLContact Map
3knh3knhL 3kniF 3knjL 3knkFContact Map
3ohc3ohcL 3ohdL 3ohjF 3ohkFContact Map
3uz63uz6O 3uz7O 3uz8F 3uz9FContact Map
3u5b3u5cX 3u5eC 3u5gX 3u5iCContact Map
3oge3ogeL 3ogyL 3oh5F 3oh7FContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
183_V 79_V 1.09 0.06
34_W 40_V 1.02 0.05
106_R 79_V 0.99 0.04
101_L 121_K 0.98 0.04
59_Y 54_K 0.96 0.04
48_T 53_A 0.89 0.03
77_D 65_A 0.89 0.03
34_W 52_V 0.80 0.02
62_R 17_K 0.79 0.02
158_T 58_T 0.79 0.02
106_R 11_G 0.78 0.02
140_L 14_K 0.78 0.02
180_G 79_V 0.77 0.02
164_R 98_V 0.76 0.02
9_I 70_E 0.75 0.02
82_I 38_R 0.75 0.02
192_L 101_V 0.74 0.02
89_V 109_D 0.73 0.02
20_L 35_T 0.72 0.02
114_V 80_V 0.72 0.02
198_A 49_L 0.72 0.02
143_A 30_R 0.72 0.02
195_D 113_S 0.72 0.02
38_R 52_V 0.71 0.02
30_P 98_V 0.71 0.02
39_W 70_E 0.71 0.02
8_Q 58_T 0.71 0.02
171_P 121_K 0.70 0.02
84_V 29_F 0.69 0.01
140_L 20_K 0.69 0.01
9_I 116_K 0.69 0.01
184_Y 38_R 0.69 0.01
69_H 120_K 0.69 0.01
28_I 56_R 0.69 0.01
199_W 113_S 0.69 0.01
141_A 16_R 0.69 0.01
62_R 82_I 0.69 0.01
106_R 2_P 0.68 0.01
206_I 79_V 0.67 0.01
133_N 4_I 0.67 0.01
51_T 70_E 0.67 0.01
31_H 104_A 0.67 0.01
100_T 36_V 0.67 0.01
89_V 11_G 0.66 0.01
15_S 109_D 0.66 0.01
108_K 80_V 0.65 0.01
29_N 8_V 0.65 0.01
17_R 109_D 0.65 0.01
72_R 65_A 0.65 0.01
28_I 30_R 0.65 0.01
70_T 60_G 0.65 0.01
43_K 38_R 0.65 0.01
113_A 68_P 0.65 0.01
139_F 122_P 0.64 0.01
55_G 54_K 0.64 0.01
96_D 81_L 0.64 0.01
91_G 38_R 0.64 0.01
57_V 22_P 0.64 0.01
56_E 109_D 0.63 0.01
203_Q 59_S 0.63 0.01
66_P 109_D 0.63 0.01
198_A 22_P 0.63 0.01
13_S 17_K 0.62 0.01
91_G 36_V 0.62 0.01
121_G 104_A 0.62 0.01
102_P 65_A 0.62 0.01
128_A 104_A 0.62 0.01
106_R 82_I 0.61 0.01
109_G 24_L 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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