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OPENSEQ.org

L04 - S13
UniProt: Q5SHN9 - P80377
Length: 336
Sequences: 1578
Seq/Len: 4.88
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2dF 3v2eM 3v2fFContact Map
2j002j00M 2j01F 2j02M 2j03FContact Map
4juw4juwM 4juxFContact Map
4kix4kixE 4kiyM 4kizE 4kj0M 4kj1E 4kj2M 4kj3E 4kj4MContact Map
4kj54kj5E 4kj6M 4kj7E 4kj8M 4kj9E 4kjaM 4kjbE 4kjcMContact Map
3ohc3ohcM 3ohdM 3ohjF 3ohkFContact Map
3knh3knhM 3kniF 3knjM 3knkFContact Map
3uz63uz6P 3uz7P 3uz8F 3uz9FContact Map
3u5b3u5cS 3u5eC 3u5gS 3u5iCContact Map
3oge3ogeM 3ogyM 3oh5F 3oh7FContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
164_R 18_A 0.84 0.00
97_Y 8_E 0.78 0.00
102_P 94_R 0.73 0.00
194_M 77_N 0.72 0.00
201_V 52_E 0.70 0.00
8_Q 39_I 0.67 0.00
34_W 105_T 0.66 0.00
26_A 30_A 0.66 0.00
198_A 9_I 0.65 0.00
202_F 30_A 0.63 0.00
53_T 115_K 0.63 0.00
46_R 84_I 0.62 0.00
46_R 118_A 0.60 0.00
17_R 64_W 0.60 0.00
202_F 117_V 0.60 0.00
36_V 37_T 0.60 0.00
188_R 113_P 0.60 0.00
10_P 56_L 0.59 0.00
23_D 39_I 0.59 0.00
62_R 55_R 0.59 0.00
91_G 119_G 0.59 0.00
68_K 97_P 0.59 0.00
113_A 14_R 0.59 0.00
125_L 27_K 0.59 0.00
7_Y 50_E 0.59 0.00
161_E 95_G 0.58 0.00
18_R 25_I 0.58 0.00
102_P 65_K 0.58 0.00
58_A 94_R 0.58 0.00
88_V 63_T 0.58 0.00
181_L 95_G 0.57 0.00
186_I 28_A 0.57 0.00
22_A 25_I 0.57 0.00
162_L 33_A 0.57 0.00
93_K 98_V 0.57 0.00
46_R 52_E 0.57 0.00
52_K 30_A 0.57 0.00
21_A 56_L 0.57 0.00
156_L 62_N 0.57 0.00
200_E 58_E 0.57 0.00
40_Q 44_R 0.57 0.00
101_L 114_R 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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