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OPENSEQ.org
L04 - S11
UniProt: Q5SHN9 - P80376
Length: 339
Sequences: 1475
Seq/Len: 4.51
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dF 3v2eK 3v2fFContact Map
2j002j00K 2j01F 2j02K 2j03FContact Map
4juw4juwK 4juxFContact Map
4kix4kixE 4kiyK 4kizE 4kj0K 4kj1E 4kj2K 4kj3E 4kj4KContact Map
4kj54kj5E 4kj6K 4kj7E 4kj8K 4kj9E 4kjaK 4kjbE 4kjcKContact Map
3ohc3ohcK 3ohdK 3ohjF 3ohkFContact Map
3knh3knhK 3kniF 3knjK 3knkFContact Map
3uz63uz6N 3uz7N 3uz8F 3uz9FContact Map
3u5b3u5cO 3u5eC 3u5gO 3u5iCContact Map
3oge3ogeK 3ogyK 3oh5F 3oh7FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
198_A 33_T 1.06 0.04
195_D 9_K 0.99 0.04
192_L 65_A 0.90 0.03
72_R 59_Y 0.79 0.02
12_L 105_V 0.79 0.02
91_G 24_S 0.77 0.02
114_V 120_R 0.77 0.02
205_R 21_I 0.75 0.02
33_L 59_Y 0.75 0.02
93_K 23_A 0.75 0.02
121_G 11_K 0.74 0.02
132_V 8_K 0.72 0.01
43_K 82_V 0.69 0.01
41_L 30_V 0.68 0.01
121_G 5_P 0.68 0.01
84_V 1_M 0.68 0.01
163_V 40_I 0.67 0.01
127_E 9_K 0.67 0.01
46_R 95_I 0.67 0.01
180_G 89_A 0.66 0.01
109_G 84_V 0.66 0.01
157_V 64_A 0.65 0.01
141_A 1_M 0.64 0.01
53_T 68_A 0.64 0.01
192_L 6_S 0.64 0.01
66_P 45_G 0.64 0.01
85_G 68_A 0.63 0.01
23_D 124_K 0.63 0.01
106_R 109_V 0.63 0.01
199_W 101_S 0.63 0.01
202_F 21_I 0.62 0.01
186_I 19_A 0.62 0.01
192_L 101_S 0.62 0.01
49_A 36_D 0.61 0.01
166_A 122_K 0.61 0.01
18_R 15_A 0.61 0.01
110_L 72_A 0.61 0.01
87_G 82_V 0.60 0.01
21_A 63_L 0.60 0.01
99_Y 63_L 0.60 0.01
33_L 30_V 0.60 0.01
180_G 18_R 0.60 0.01
145_E 40_I 0.60 0.01
170_L 22_H 0.60 0.01
172_W 24_S 0.60 0.01
199_W 97_A 0.59 0.01
187_V 72_A 0.59 0.01
19_E 6_S 0.59 0.01
82_I 82_V 0.59 0.01
9_I 24_S 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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