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OPENSEQ.org
L04 - S09
UniProt: Q5SHN9 - P80374
Length: 338
Sequences: 1663
Seq/Len: 5.10
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2dF 3v2eI 3v2fFContact Map
2j002j00I 2j01F 2j02I 2j03FContact Map
4juw4juwI 4juxFContact Map
4kix4kixE 4kiyI 4kizE 4kj0I 4kj1E 4kj2I 4kj3E 4kj4IContact Map
4kj54kj5E 4kj6I 4kj7E 4kj8I 4kj9E 4kjaI 4kjbE 4kjcIContact Map
3ohc3ohcI 3ohdI 3ohjF 3ohkFContact Map
3knh3knhI 3kniF 3knjI 3knkFContact Map
3uz63uz6L 3uz7L 3uz8F 3uz9FContact Map
3u5b3u5cQ 3u5eC 3u5gQ 3u5iCContact Map
3oge3ogeI 3ogyI 3oh5F 3oh7FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_R 52_A 0.83 0.00
35_E 118_K 0.79 0.00
171_P 121_R 0.79 0.00
109_G 31_Q 0.78 0.00
84_V 68_G 0.76 0.00
13_S 28_V 0.75 0.00
61_G 93_R 0.74 0.00
175_T 34_N 0.70 0.00
14_P 70_K 0.70 0.00
195_D 75_D 0.70 0.00
193_V 106_A 0.68 0.00
170_L 51_R 0.67 0.00
15_S 14_V 0.67 0.00
168_R 59_F 0.66 0.00
206_I 14_V 0.66 0.00
79_G 75_D 0.65 0.00
84_V 43_A 0.65 0.00
200_E 47_L 0.64 0.00
13_S 41_V 0.62 0.00
126_V 61_A 0.62 0.00
192_L 26_V 0.61 0.00
196_L 6_G 0.61 0.00
50_S 28_V 0.61 0.00
16_G 72_G 0.61 0.00
89_V 91_D 0.61 0.00
91_G 101_F 0.60 0.00
196_L 12_E 0.60 0.00
138_E 19_L 0.60 0.00
187_V 35_E 0.60 0.00
157_V 90_P 0.59 0.00
193_V 31_Q 0.59 0.00
121_G 54_D 0.59 0.00
46_R 70_K 0.59 0.00
187_V 27_T 0.58 0.00
31_H 101_F 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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