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OPENSEQ.org
L04 - S04
UniProt: Q5SHN9 - P80373
Length: 419
Sequences: 1263
Seq/Len: 3.10
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dF 3v2eD 3v2fFContact Map
2j002j00D 2j01F 2j02D 2j03FContact Map
4juw4juwD 4juxFContact Map
4kix4kixE 4kiyD 4kizE 4kj0D 4kj1E 4kj2D 4kj3E 4kj4DContact Map
4kj54kj5E 4kj6D 4kj7E 4kj8D 4kj9E 4kjaD 4kjbE 4kjcDContact Map
3knh3knhD 3kniF 3knjD 3knkFContact Map
3ohc3ohcD 3ohdD 3ohjF 3ohkFContact Map
3uz63uz6G 3uz7G 3uz8F 3uz9FContact Map
3oge3ogeD 3ogyD 3oh5F 3oh7FContact Map
3uyd3uydG 3uyeF 3uyfG 3uygFContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_A 127_T 0.84 0.00
36_V 65_R 0.83 0.00
66_P 142_P 0.81 0.00
85_G 60_E 0.78 0.00
199_W 28_S 0.76 0.00
200_E 149_A 0.74 0.00
202_F 131_R 0.72 0.00
168_R 133_V 0.71 0.00
167_A 10_R 0.71 0.00
206_I 161_N 0.70 0.00
32_L 78_L 0.69 0.00
102_P 162_L 0.69 0.00
176_L 73_R 0.69 0.00
144_K 198_V 0.69 0.00
157_V 38_Y 0.68 0.00
89_V 113_S 0.67 0.00
96_D 56_V 0.66 0.00
193_V 177_D 0.66 0.00
37_V 204_I 0.66 0.00
17_R 184_K 0.64 0.00
84_V 79_F 0.64 0.00
120_E 6_G 0.64 0.00
168_R 56_V 0.64 0.00
193_V 47_R 0.63 0.00
40_Q 73_R 0.63 0.00
121_G 80_E 0.63 0.00
17_R 73_R 0.63 0.00
145_E 77_N 0.63 0.00
123_L 183_G 0.62 0.00
110_L 178_V 0.62 0.00
33_L 91_S 0.62 0.00
170_L 148_V 0.62 0.00
200_E 170_V 0.62 0.00
156_L 131_R 0.61 0.00
75_H 15_E 0.61 0.00
163_V 134_D 0.61 0.00
94_P 70_I 0.61 0.00
90_F 116_Q 0.60 0.00
98_S 37_P 0.60 0.00
117_R 186_L 0.60 0.00
141_A 188_L 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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