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OPENSEQ.org
L04 - S03
UniProt: Q5SHN9 - P80372
Length: 449
Sequences: 1427
Seq/Len: 3.48
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2dF 3v2eC 3v2fFContact Map
2j002j00C 2j01F 2j02C 2j03FContact Map
4juw4juwC 4juxFContact Map
4kix4kixE 4kiyC 4kizE 4kj0C 4kj1E 4kj2C 4kj3E 4kj4CContact Map
4kj54kj5E 4kj6C 4kj7E 4kj8C 4kj9E 4kjaC 4kjbE 4kjcCContact Map
3ohc3ohcC 3ohdC 3ohjF 3ohkFContact Map
3knh3knhC 3kniF 3knjC 3knkFContact Map
3uz63uz6F 3uz7F 3uz8F 3uz9FContact Map
3u5b3u5cD 3u5eC 3u5gD 3u5iCContact Map
3oge3ogeC 3ogyC 3oh5F 3oh7FContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
109_G 13_G 0.90 0.00
102_P 185_G 0.86 0.00
89_V 30_R 0.84 0.00
85_G 162_Q 0.83 0.00
199_W 158_G 0.81 0.00
127_E 154_S 0.81 0.00
29_N 126_R 0.80 0.00
52_K 70_V 0.80 0.00
181_L 38_R 0.79 0.00
19_E 28_Q 0.79 0.00
141_A 93_K 0.77 0.00
53_T 52_L 0.77 0.00
146_A 182_I 0.76 0.00
144_K 90_E 0.74 0.00
120_E 91_L 0.74 0.00
105_V 167_W 0.74 0.00
186_I 187_A 0.73 0.00
156_L 192_T 0.73 0.00
84_V 151_V 0.73 0.00
148_L 14_I 0.72 0.00
31_H 162_Q 0.72 0.00
196_L 53_A 0.72 0.00
98_S 198_V 0.72 0.00
28_I 143_E 0.70 0.00
40_Q 161_E 0.70 0.00
113_A 21_R 0.70 0.00
189_T 103_V 0.70 0.00
127_E 101_L 0.70 0.00
70_T 127_R 0.70 0.00
102_P 125_E 0.70 0.00
59_Y 13_G 0.69 0.00
182_N 68_V 0.69 0.00
58_A 71_A 0.69 0.00
172_W 76_V 0.69 0.00
170_L 165_T 0.69 0.00
166_A 67_T 0.68 0.00
161_E 91_L 0.68 0.00
145_E 89_E 0.68 0.00
62_R 144_S 0.68 0.00
145_E 52_L 0.67 0.00
34_W 24_A 0.66 0.00
109_G 3_N 0.66 0.00
185_D 158_G 0.66 0.00
54_R 129_A 0.65 0.00
10_P 153_V 0.65 0.00
113_A 60_A 0.65 0.00
32_L 94_L 0.65 0.00
131_G 79_R 0.65 0.00
157_V 99_V 0.64 0.00
103_K 168_A 0.64 0.00
34_W 169_A 0.64 0.00
31_H 143_E 0.64 0.00
33_L 128_F 0.64 0.00
72_R 198_V 0.63 0.00
10_P 106_V 0.63 0.00
59_Y 5_I 0.63 0.00
196_L 208_I 0.63 0.00
84_V 104_Q 0.63 0.00
41_L 121_A 0.63 0.00
156_L 183_D 0.62 0.00
154_V 151_V 0.62 0.00
166_A 38_R 0.62 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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