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OPENSEQ.org
L04 - L28
UniProt: Q5SHN9 - P60494
Length: 308
Sequences: 1107
Seq/Len: 4.21
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dF1 3v2fF1Contact Map
2j002j01F1 2j03F1Contact Map
4juw4juxF1Contact Map
4kix4kixEX 4kizEX 4kj1EX 4kj3EXContact Map
4kj54kj5EX 4kj7EX 4kj9EX 4kjbEXContact Map
2zjr2zjrCUContact Map
4btc4btdF1Contact Map
3uyd3uyeFZ 3uygFZContact Map
4gd13r8sEX 3r8tEXContact Map
3ohc3ohjF1 3ohkF1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
137_K 10_K 0.76 0.00
41_L 18_I 0.76 0.00
111_A 2_S 0.75 0.00
16_G 74_V 0.74 0.00
158_T 39_K 0.73 0.00
121_G 11_R 0.73 0.00
186_I 43_Y 0.73 0.00
113_A 12_P 0.71 0.00
50_S 16_N 0.71 0.00
21_A 41_R 0.69 0.00
84_V 46_L 0.69 0.00
156_L 41_R 0.68 0.00
87_G 34_T 0.68 0.00
105_V 46_L 0.67 0.00
118_A 63_A 0.67 0.00
116_D 17_S 0.67 0.00
102_P 4_V 0.66 0.00
190_E 7_I 0.65 0.00
62_R 44_P 0.64 0.00
196_L 2_S 0.64 0.00
93_K 11_R 0.63 0.00
12_L 67_I 0.63 0.00
29_N 53_V 0.62 0.00
189_T 37_I 0.62 0.00
64_I 65_S 0.61 0.00
125_L 47_Q 0.61 0.00
125_L 58_I 0.60 0.00
140_L 73_L 0.59 0.00
114_V 62_V 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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