May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L04 - L27
UniProt: Q5SHN9 - P60493
Length: 295
Sequences: 1443
Seq/Len: 5.08
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dF0 3v2fF0Contact Map
2j002j01F0 2j03F0Contact Map
4juw4juxF0Contact Map
4kix4kixEW 4kizEW 4kj1EW 4kj3EWContact Map
4kj54kj5EW 4kj7EW 4kj9EW 4kjbEWContact Map
2zjr2zjrCTContact Map
4btc4btdF0Contact Map
3uyd3uyeF3 3uygF3Contact Map
4gd13r8sEW 3r8tEWContact Map
3ohc3ohjF0 3ohkF0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
196_L 83_P 0.85 0.00
62_R 17_Q 0.83 0.00
164_R 62_L 0.80 0.00
16_G 6_G 0.79 0.00
184_Y 60_F 0.76 0.00
96_D 33_A 0.69 0.00
13_S 84_L 0.68 0.00
110_L 72_R 0.66 0.00
125_L 61_A 0.65 0.00
121_G 18_A 0.64 0.00
123_L 63_V 0.64 0.00
51_T 72_R 0.63 0.00
181_L 11_R 0.63 0.00
102_P 2_A 0.61 0.00
85_G 52_G 0.61 0.00
139_F 7_L 0.61 0.00
28_I 81_V 0.60 0.00
44_R 71_D 0.59 0.00
144_K 11_R 0.58 0.00
17_R 68_E 0.57 0.00
51_T 84_L 0.57 0.00
120_E 49_K 0.57 0.00
155_L 37_L 0.56 0.00
102_P 31_V 0.56 0.00
23_D 6_G 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 2.085 seconds.