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OPENSEQ.org
L04 - L16
UniProt: Q5SHN9 - P60489
Length: 351
Sequences: 1297
Seq/Len: 3.84
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoCHContact Map
1vq81vq8CHContact Map
1vqp1vqpCHContact Map
1vqm1vqmCHContact Map
1vql1vqlCHContact Map
1vqk1vqkCHContact Map
1yhq1yhqCHContact Map
1s721s72CHContact Map
1vq91vq9CHContact Map
1vqn1vqnCHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
16_G 104_F 0.91 0.00
170_L 18_K 0.90 0.00
19_E 37_L 0.87 0.00
34_W 71_D 0.83 0.00
60_S 85_K 0.80 0.00
91_G 45_Q 0.79 0.00
38_R 85_K 0.79 0.00
69_H 60_R 0.78 0.00
49_A 22_K 0.76 0.00
35_E 73_P 0.72 0.00
97_Y 52_V 0.71 0.00
102_P 7_M 0.70 0.00
139_F 106_V 0.69 0.00
7_Y 35_V 0.69 0.00
66_P 59_R 0.69 0.00
157_V 75_T 0.69 0.00
38_R 27_V 0.69 0.00
108_K 31_D 0.68 0.00
21_A 9_Y 0.67 0.00
85_G 83_M 0.66 0.00
79_G 85_K 0.66 0.00
38_R 35_V 0.66 0.00
6_V 67_R 0.66 0.00
28_I 106_V 0.65 0.00
19_E 78_P 0.64 0.00
23_D 110_T 0.64 0.00
140_L 13_Q 0.64 0.00
132_V 37_L 0.63 0.00
110_L 12_Q 0.63 0.00
155_L 75_T 0.62 0.00
66_P 36_A 0.62 0.00
14_P 132_V 0.62 0.00
30_P 59_R 0.62 0.00
62_R 12_Q 0.62 0.00
104_K 29_F 0.62 0.00
187_V 107_A 0.61 0.00
200_E 90_V 0.61 0.00
149_D 89_N 0.61 0.00
128_A 6_R 0.61 0.00
180_G 85_K 0.60 0.00
36_V 35_V 0.60 0.00
91_G 135_D 0.60 0.00
75_H 85_K 0.59 0.00
8_Q 61_G 0.59 0.00
88_V 11_K 0.59 0.00
24_L 77_K 0.59 0.00
28_I 3_M 0.59 0.00
58_A 61_G 0.59 0.00
90_F 120_I 0.59 0.00
152_E 68_I 0.59 0.00
80_A 58_F 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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