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OPENSEQ.org

L04 - S07
UniProt: Q5SHN9 - P17291
Length: 366
Sequences: 1534
Seq/Len: 4.31
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dF 3v2eG 3v2fFContact Map
2j002j00G 2j01F 2j02G 2j03FContact Map
4juw4juwG 4juxFContact Map
4kix4kixE 4kiyG 4kizE 4kj0G 4kj1E 4kj2G 4kj3E 4kj4GContact Map
4kj54kj5E 4kj6G 4kj7E 4kj8G 4kj9E 4kjaG 4kjbE 4kjcGContact Map
3ohc3ohcG 3ohdG 3ohjF 3ohkFContact Map
3knh3knhG 3kniF 3knjG 3knkFContact Map
3uz63uz6J 3uz7J 3uz8F 3uz9FContact Map
3oge3ogeG 3ogyG 3oh5F 3oh7FContact Map
3uyd3uydJ 3uyeF 3uyfJ 3uygFContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_H 20_D 0.88 0.00
49_A 152_A 0.87 0.00
196_L 56_Q 0.80 0.00
199_W 56_Q 0.77 0.00
115_A 4_R 0.72 0.00
111_A 104_L 0.72 0.00
58_A 32_R 0.69 0.00
143_A 97_Q 0.69 0.00
78_I 64_Q 0.68 0.00
57_V 99_L 0.68 0.00
142_W 18_Y 0.68 0.00
202_F 130_G 0.67 0.00
144_K 41_R 0.67 0.00
55_G 29_K 0.66 0.00
33_L 114_R 0.66 0.00
17_R 53_K 0.65 0.00
181_L 130_G 0.64 0.00
36_V 18_Y 0.64 0.00
14_P 138_K 0.63 0.00
68_K 86_Q 0.63 0.00
121_G 6_R 0.62 0.00
89_V 149_R 0.62 0.00
170_L 16_L 0.62 0.00
68_K 79_R 0.62 0.00
109_G 152_A 0.62 0.00
33_L 14_P 0.61 0.00
97_Y 43_F 0.61 0.00
55_G 23_V 0.61 0.00
19_E 125_M 0.61 0.00
174_V 83_A 0.60 0.00
144_K 108_A 0.60 0.00
8_Q 9_V 0.60 0.00
84_V 4_R 0.60 0.00
93_K 156_W 0.60 0.00
156_L 23_V 0.60 0.00
59_Y 139_E 0.59 0.00
68_K 34_G 0.59 0.00
10_P 156_W 0.59 0.00
142_W 138_K 0.59 0.00
107_K 63_K 0.59 0.00
196_L 30_I 0.59 0.00
11_V 52_E 0.59 0.00
80_A 138_K 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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