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OPENSEQ.org
L03 - L11
UniProt: Q5SHN8 - Q5SLP6
Length: 353
Sequences: 1447
Seq/Len: 4.22
I_Prob: 0.04
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBIContact Map
1vq81vq8BIContact Map
1vqp1vqpBIContact Map
1vqm1vqmBIContact Map
1vql1vqlBIContact Map
1vqk1vqkBIContact Map
1yhq1yhqBIContact Map
1s721s72BIContact Map
1vq91vq9BIContact Map
1vqn1vqnBIContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
128_S 85_E 1.06 0.04
178_E 85_E 0.75 0.02
163_E 99_I 0.75 0.02
85_N 125_R 0.74 0.01
13_R 20_A 0.71 0.01
14_I 12_L 0.68 0.01
100_E 12_L 0.66 0.01
62_P 120_L 0.64 0.01
108_S 89_H 0.64 0.01
132_H 38_V 0.64 0.01
196_V 49_G 0.63 0.01
127_D 86_K 0.62 0.01
157_A 131_A 0.61 0.01
151_Y 133_S 0.61 0.01
26_I 75_S 0.60 0.01
85_N 94_E 0.60 0.01
184_V 137_E 0.59 0.01
145_K 30_H 0.59 0.01
15_F 61_A 0.58 0.01
195_L 46_A 0.57 0.01
26_I 136_V 0.57 0.01
37_R 49_G 0.57 0.01
42_D 69_T 0.56 0.01
198_V 69_T 0.56 0.01
87_E 44_A 0.56 0.01
143_N 41_F 0.55 0.01
147_P 6_A 0.55 0.01
133_K 78_I 0.55 0.01
42_D 70_K 0.55 0.01
155_K 94_E 0.55 0.01
196_V 94_E 0.55 0.01
120_W 136_V 0.54 0.01
176_I 43_A 0.54 0.01
157_A 108_A 0.53 0.01
146_T 136_V 0.53 0.01
128_S 5_V 0.53 0.01
40_E 109_K 0.53 0.01
36_R 86_K 0.53 0.01
116_V 47_N 0.53 0.01
196_V 100_T 0.53 0.01
147_P 73_P 0.53 0.01
170_L 84_L 0.53 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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