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OPENSEQ.org
L03 - S16
UniProt: Q5SHN8 - Q5SJH3
Length: 294
Sequences: 1370
Seq/Len: 4.76
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2dE 3v2eP 3v2fEContact Map
2j002j00P 2j01E 2j02P 2j03EContact Map
4juw4juwP 4juxEContact Map
4kix4kixD 4kiyP 4kizD 4kj0P 4kj1D 4kj2P 4kj3D 4kj4PContact Map
4kj54kj5D 4kj6P 4kj7D 4kj8P 4kj9D 4kjaP 4kjbD 4kjcPContact Map
3knh3knhP 3kniE 3knjP 3knkEContact Map
3ohc3ohcP 3ohdP 3ohjE 3ohkEContact Map
3uz63uz6S 3uz7S 3uz8E 3uz9EContact Map
3oge3ogeP 3ogyP 3oh5E 3oh7EContact Map
3uyd3uydS 3uyeE 3uyfS 3uygEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
62_P 18_R 0.82 0.00
90_T 33_I 0.79 0.00
51_F 69_T 0.78 0.00
132_H 35_K 0.77 0.00
9_V 20_V 0.72 0.00
152_K 30_G 0.67 0.00
20_A 70_A 0.65 0.00
144_R 39_Y 0.64 0.00
125_G 69_T 0.63 0.00
42_D 39_Y 0.62 0.00
74_P 51_V 0.61 0.00
50_G 27_K 0.61 0.00
101_R 67_T 0.61 0.00
78_L 67_T 0.61 0.00
148_G 67_T 0.61 0.00
109_K 46_P 0.60 0.00
1_M 19_I 0.60 0.00
17_D 3_K 0.60 0.00
91_V 22_T 0.60 0.00
160_Y 44_T 0.59 0.00
13_R 35_K 0.59 0.00
140_S 65_Q 0.58 0.00
201_T 71_R 0.57 0.00
160_Y 52_D 0.57 0.00
154_K 38_Y 0.57 0.00
157_A 40_D 0.57 0.00
98_P 61_S 0.57 0.00
60_N 24_A 0.57 0.00
132_H 40_D 0.57 0.00
30_P 18_R 0.56 0.00
76_R 26_R 0.56 0.00
131_A 35_K 0.55 0.00
83_D 11_S 0.55 0.00
33_V 66_P 0.55 0.00
143_N 45_T 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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