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OPENSEQ.org
L03 - L36
UniProt: Q5SHN8 - Q5SHR2
Length: 243
Sequences: 854
Seq/Len: 3.56
I_Prob: 0.06
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dE9 3v2fE9Contact Map
2j002j01E9 2j03E9Contact Map
4juw4juxE9Contact Map
4kix4kixD4 4kizD4 4kj1D4 4kj3D4Contact Map
4kj54kj5D4 4kj7D4 4kj9D4 4kjbD4Contact Map
2zjr2zjrB4Contact Map
4btc4btdE9Contact Map
4gd13r8sD4 3r8tD4Contact Map
3knh3kniE9 3knkE9Contact Map
3v223v23E9 3v25E9Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
199_R 18_R 1.11 0.06
199_R 31_K 1.06 0.05
193_G 22_R 1.01 0.04
9_V 22_R 0.92 0.03
165_V 30_P 0.91 0.03
99_G 31_K 0.85 0.03
172_V 30_P 0.80 0.02
18_D 4_R 0.79 0.02
53_P 4_R 0.75 0.02
150_V 15_K 0.75 0.02
26_I 24_Y 0.72 0.01
21_V 28_E 0.71 0.01
193_G 24_Y 0.70 0.01
159_H 16_V 0.69 0.01
147_P 18_R 0.68 0.01
164_R 35_R 0.68 0.01
9_V 23_V 0.68 0.01
154_K 16_V 0.67 0.01
111_R 5_A 0.66 0.01
143_N 22_R 0.66 0.01
30_P 4_R 0.66 0.01
120_W 25_V 0.65 0.01
28_A 16_V 0.65 0.01
74_P 29_N 0.65 0.01
47_V 5_A 0.64 0.01
192_N 23_V 0.64 0.01
166_T 11_C 0.64 0.01
60_N 28_E 0.64 0.01
97_K 23_V 0.63 0.01
128_S 29_N 0.63 0.01
6_G 23_V 0.62 0.01
141_I 5_A 0.62 0.01
41_K 9_R 0.62 0.01
71_G 16_V 0.62 0.01
100_E 15_K 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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