May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L03 - S05
UniProt: Q5SHN8 - Q5SHQ5
Length: 368
Sequences: 1478
Seq/Len: 4.11
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cE 3v2dE 3v2eE 3v2fEContact Map
2j002j00E 2j01E 2j02E 2j03EContact Map
4juw4juwE 4juxEContact Map
4kix4kixD 4kiyE 4kizD 4kj0E 4kj1D 4kj2E 4kj3D 4kj4EContact Map
4kj54kj5D 4kj6E 4kj7D 4kj8E 4kj9D 4kjaE 4kjbD 4kjcEContact Map
3ohc3ohcE 3ohdE 3ohjE 3ohkEContact Map
3knh3knhE 3kniE 3knjE 3knkEContact Map
3uz63uz6H 3uz7H 3uz8E 3uz9EContact Map
3oge3ogeE 3ogyE 3oh5E 3oh7EContact Map
3uyd3uydH 3uyeE 3uyfH 3uygEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
152_K 26_F 0.94 0.01
98_P 141_Q 0.89 0.01
172_V 38_Q 0.88 0.01
202_K 66_M 0.87 0.01
81_I 138_A 0.87 0.01
109_K 55_V 0.85 0.01
188_V 38_Q 0.78 0.01
6_G 93_P 0.78 0.01
60_N 147_D 0.75 0.00
52_L 58_A 0.73 0.00
60_N 136_M 0.73 0.00
90_T 146_A 0.73 0.00
188_V 83_E 0.71 0.00
43_G 9_K 0.68 0.00
141_I 36_D 0.68 0.00
100_E 143_R 0.68 0.00
201_T 122_E 0.67 0.00
141_I 27_R 0.67 0.00
62_P 17_A 0.67 0.00
121_N 37_R 0.66 0.00
159_H 72_Q 0.66 0.00
9_V 95_A 0.66 0.00
91_V 88_K 0.66 0.00
63_L 148_V 0.65 0.00
199_R 136_M 0.65 0.00
120_W 19_M 0.65 0.00
184_V 158_A 0.64 0.00
91_V 147_D 0.64 0.00
144_R 29_G 0.64 0.00
66_H 30_A 0.64 0.00
146_T 129_I 0.64 0.00
27_L 48_A 0.64 0.00
54_Q 5_D 0.63 0.00
184_V 69_V 0.63 0.00
83_D 71_L 0.63 0.00
201_T 149_E 0.63 0.00
141_I 117_D 0.63 0.00
128_S 10_M 0.63 0.00
126_P 27_R 0.62 0.00
125_G 13_I 0.62 0.00
15_F 60_Y 0.62 0.00
83_D 131_I 0.62 0.00
178_E 8_E 0.62 0.00
51_F 43_L 0.61 0.00
83_D 116_T 0.61 0.00
99_G 85_G 0.61 0.00
68_A 143_R 0.61 0.00
114_A 120_T 0.61 0.00
106_G 44_G 0.60 0.00
60_N 52_P 0.60 0.00
122_F 119_L 0.60 0.00
127_D 49_P 0.60 0.00
71_G 141_Q 0.60 0.00
21_V 38_Q 0.60 0.00
113_F 33_V 0.60 0.00
137_H 27_R 0.59 0.00
50_G 136_M 0.59 0.00
63_L 110_L 0.59 0.00
64_K 116_T 0.59 0.00
52_L 86_A 0.59 0.00
114_A 24_R 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2981 seconds.