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OPENSEQ.org
L03 - S08
UniProt: Q5SHN8 - Q5SHQ2
Length: 344
Sequences: 1535
Seq/Len: 4.61
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2dE 3v2eH 3v2fEContact Map
2j002j00H 2j01E 2j02H 2j03EContact Map
4juw4juwH 4juxEContact Map
4kix4kixD 4kiyH 4kizD 4kj0H 4kj1D 4kj2H 4kj3D 4kj4HContact Map
4kj54kj5D 4kj6H 4kj7D 4kj8H 4kj9D 4kjaH 4kjbD 4kjcHContact Map
3ohc3ohcH 3ohdH 3ohjE 3ohkEContact Map
3knh3knhH 3kniE 3knjH 3knkEContact Map
3uz63uz6K 3uz7K 3uz8E 3uz9EContact Map
3u5b3u5cW 3u5eB 3u5gW 3u5iBContact Map
3oge3ogeH 3ogyH 3oh5E 3oh7EContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
114_A 105_R 0.87 0.00
64_K 30_R 0.80 0.00
193_G 100_I 0.79 0.00
40_E 25_D 0.78 0.00
23_V 42_E 0.77 0.00
188_V 103_V 0.77 0.00
109_K 22_E 0.75 0.00
90_T 38_I 0.74 0.00
200_E 135_C 0.73 0.00
159_H 96_G 0.72 0.00
116_V 118_V 0.72 0.00
58_R 104_R 0.72 0.00
15_F 86_I 0.71 0.00
107_T 51_V 0.69 0.00
146_T 134_I 0.69 0.00
99_G 133_L 0.68 0.00
164_R 19_V 0.68 0.00
31_C 135_C 0.67 0.00
108_S 77_E 0.66 0.00
83_D 134_I 0.66 0.00
63_L 52_D 0.65 0.00
157_A 82_H 0.65 0.00
193_G 50_R 0.64 0.00
49_L 100_I 0.64 0.00
191_P 98_K 0.64 0.00
156_M 44_F 0.64 0.00
138_P 38_I 0.63 0.00
178_E 99_E 0.63 0.00
37_R 129_V 0.63 0.00
174_D 6_I 0.62 0.00
18_D 79_V 0.62 0.00
167_V 44_F 0.62 0.00
54_Q 126_K 0.61 0.00
36_R 30_R 0.61 0.00
47_V 58_Y 0.61 0.00
137_H 9_M 0.61 0.00
50_G 35_I 0.61 0.00
149_R 133_L 0.60 0.00
33_V 116_K 0.60 0.00
62_P 136_E 0.60 0.00
189_P 14_R 0.60 0.00
36_R 58_Y 0.60 0.00
54_Q 76_P 0.60 0.00
47_V 24_T 0.59 0.00
94_E 133_L 0.59 0.00
1_M 36_L 0.59 0.00
39_P 2_L 0.59 0.00
129_H 132_E 0.59 0.00
85_N 48_Y 0.59 0.00
82_R 100_I 0.58 0.00
9_V 6_I 0.58 0.00
37_R 54_D 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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