OPENSEQ.org
L03 - S19
UniProt: Q5SHN8 - Q5SHP2
Length: 299
Sequences: 1459
Seq/Len: 4.98
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cS 3v2dE 3v2eS 3v2fEContact Map
2j002j00S 2j01E 2j02S 2j03EContact Map
4juw4juwS 4juxEContact Map
4kix4kixD 4kiyS 4kizD 4kj0S 4kj1D 4kj2S 4kj3D 4kj4SContact Map
4kj54kj5D 4kj6S 4kj7D 4kj8S 4kj9D 4kjaS 4kjbD 4kjcSContact Map
3knh3knhS 3kniE 3knjS 3knkEContact Map
3ohc3ohcS 3ohdS 3ohjE 3ohkEContact Map
3uz63uz6V 3uz7V 3uz8E 3uz9EContact Map
3oge3ogeS 3ogyS 3oh5E 3oh7EContact Map
3uyd3uydV 3uyeE 3uyfV 3uygEContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
146_T 44_M 0.99 0.02
193_G 65_N 0.94 0.02
121_N 26_G 0.88 0.01
7_V 29_R 0.85 0.01
50_G 52_Y 0.82 0.01
159_H 62_I 0.80 0.01
106_G 51_V 0.80 0.01
81_I 45_V 0.77 0.01
145_K 44_M 0.76 0.01
108_S 5_L 0.76 0.01
104_V 69_H 0.74 0.01
101_R 87_A 0.74 0.01
159_H 43_E 0.68 0.01
176_I 55_K 0.67 0.01
199_R 25_K 0.63 0.01
159_H 87_A 0.63 0.01
120_W 65_N 0.63 0.01
113_F 80_Y 0.63 0.01
120_W 85_K 0.62 0.01
63_L 32_K 0.62 0.01
1_M 53_N 0.62 0.01
84_F 52_Y 0.62 0.01
105_T 45_V 0.62 0.01
99_G 50_A 0.62 0.01
33_V 60_V 0.62 0.01
90_T 31_I 0.62 0.01
16_R 61_Y 0.62 0.01
126_P 16_L 0.61 0.01
75_V 65_N 0.61 0.01
4_I 57_H 0.61 0.01
85_N 13_D 0.61 0.01
36_R 5_L 0.60 0.01
98_P 67_V 0.59 0.01
55_N 45_V 0.59 0.01
176_I 61_Y 0.59 0.01
182_L 60_V 0.59 0.01
179_E 75_A 0.59 0.01
146_T 85_K 0.58 0.01
69_K 40_I 0.58 0.01
157_A 76_P 0.58 0.01
106_G 48_T 0.58 0.01
159_H 19_V 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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