OPENSEQ.org
L03 - L04
UniProt: Q5SHN8 - Q5SHN9
Length: 416
Sequences: 1701
Seq/Len: 4.22
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
1vqo1vqoBCContact Map
1vq81vq8BCContact Map
1vqp1vqpBCContact Map
1vqm1vqmBCContact Map
1vql1vqlBCContact Map
1vqk1vqkBCContact Map
1yhq1yhqBCContact Map
1s721s72BCContact Map
1vq91vq9BCContact Map
1vqn1vqnBCContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
159_H 102_P 0.94 0.01
198_V 139_F 0.78 0.01
191_P 196_L 0.75 0.01
9_V 202_F 0.72 0.00
38_T 126_V 0.71 0.00
53_P 156_L 0.69 0.00
163_E 11_V 0.68 0.00
123_A 200_E 0.68 0.00
68_A 207_G 0.67 0.00
78_L 126_V 0.67 0.00
77_I 38_R 0.67 0.00
36_R 166_A 0.66 0.00
17_D 23_D 0.66 0.00
85_N 132_V 0.66 0.00
109_K 109_G 0.66 0.00
149_R 201_V 0.65 0.00
145_K 12_L 0.65 0.00
57_K 85_G 0.64 0.00
74_P 189_T 0.62 0.00
151_Y 106_R 0.62 0.00
163_E 8_Q 0.62 0.00
178_E 164_R 0.61 0.00
202_K 29_N 0.61 0.00
52_L 33_L 0.61 0.00
146_T 117_R 0.60 0.00
198_V 58_A 0.60 0.00
153_G 106_R 0.60 0.00
79_R 83_F 0.60 0.00
156_M 35_E 0.60 0.00
144_R 66_P 0.60 0.00
122_F 49_A 0.59 0.00
201_T 186_I 0.59 0.00
100_E 82_I 0.59 0.00
120_W 61_G 0.58 0.00
180_N 170_L 0.58 0.00
201_T 12_L 0.57 0.00
141_I 194_M 0.57 0.00
202_K 207_G 0.57 0.00
95_I 170_L 0.57 0.00
141_I 170_L 0.57 0.00
150_V 33_L 0.57 0.00
201_T 31_H 0.57 0.00
182_L 142_W 0.56 0.00
81_I 43_K 0.56 0.00
193_G 53_T 0.56 0.00
172_V 135_K 0.56 0.00
177_P 141_A 0.56 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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