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OPENSEQ.org
L03 - S20
UniProt: Q5SHN8 - P80380
Length: 312
Sequences: 1209
Seq/Len: 4.18
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cT 3v2dE 3v2eT 3v2fEContact Map
2j002j00T 2j01E 2j02T 2j03EContact Map
4juw4juwT 4juxEContact Map
4kix4kixD 4kiyT 4kizD 4kj0T 4kj1D 4kj2T 4kj3D 4kj4TContact Map
4kj54kj5D 4kj6T 4kj7D 4kj8T 4kj9D 4kjaT 4kjbD 4kjcTContact Map
3knh3knhT 3kniE 3knjT 3knkEContact Map
3ohc3ohcT 3ohdT 3ohjE 3ohkEContact Map
3uz63uz6W 3uz7W 3uz8E 3uz9EContact Map
3oge3ogeT 3ogyT 3oh5E 3oh7EContact Map
3uyd3uydW 3uyeE 3uyfW 3uygEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
31_C 27_K 0.88 0.00
99_G 59_A 0.78 0.00
175_V 63_I 0.78 0.00
165_V 21_K 0.78 0.00
198_V 47_G 0.75 0.00
21_V 73_H 0.74 0.00
6_G 81_K 0.72 0.00
165_V 33_I 0.71 0.00
62_P 60_E 0.69 0.00
169_N 39_K 0.69 0.00
99_G 84_L 0.69 0.00
147_P 8_R 0.69 0.00
76_R 71_T 0.67 0.00
182_L 88_V 0.66 0.00
165_V 91_L 0.66 0.00
184_V 71_T 0.65 0.00
22_P 21_K 0.65 0.00
126_P 83_R 0.65 0.00
3_G 34_K 0.64 0.00
42_D 15_R 0.64 0.00
78_L 51_E 0.64 0.00
128_S 24_L 0.64 0.00
163_E 36_L 0.64 0.00
178_E 58_K 0.64 0.00
69_K 30_K 0.63 0.00
14_I 84_L 0.63 0.00
119_R 73_H 0.63 0.00
38_T 89_R 0.63 0.00
65_G 15_R 0.62 0.00
194_G 69_G 0.61 0.00
28_A 69_G 0.61 0.00
14_I 37_S 0.61 0.00
100_E 89_R 0.61 0.00
118_K 74_K 0.60 0.00
160_Y 17_R 0.60 0.00
25_V 66_A 0.60 0.00
108_S 91_L 0.60 0.00
4_I 10_L 0.60 0.00
31_C 73_H 0.59 0.00
74_P 81_K 0.59 0.00
97_K 53_L 0.59 0.00
61_R 91_L 0.59 0.00
6_G 64_D 0.59 0.00
17_D 82_S 0.59 0.00
102_V 53_L 0.58 0.00
144_R 22_R 0.58 0.00
175_V 62_L 0.58 0.00
84_F 46_E 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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