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OPENSEQ.org
L03 - S11
UniProt: Q5SHN8 - P80376
Length: 335
Sequences: 1322
Seq/Len: 4.01
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2dE 3v2eK 3v2fEContact Map
2j002j00K 2j01E 2j02K 2j03EContact Map
4juw4juwK 4juxEContact Map
4kix4kixD 4kiyK 4kizD 4kj0K 4kj1D 4kj2K 4kj3D 4kj4KContact Map
4kj54kj5D 4kj6K 4kj7D 4kj8K 4kj9D 4kjaK 4kjbD 4kjcKContact Map
3ohc3ohcK 3ohdK 3ohjE 3ohkEContact Map
3knh3knhK 3kniE 3knjK 3knkEContact Map
3uz63uz6N 3uz7N 3uz8E 3uz9EContact Map
3u5b3u5cO 3u5eB 3u5gO 3u5iBContact Map
3oge3ogeK 3ogyK 3oh5E 3oh7EContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
199_R 11_K 0.99 0.01
188_V 2_A 0.91 0.01
99_G 20_Y 0.90 0.01
101_R 24_S 0.82 0.01
77_I 105_V 0.81 0.01
45_T 2_A 0.76 0.01
147_P 119_C 0.76 0.01
154_K 97_A 0.76 0.01
89_D 45_G 0.75 0.01
91_V 94_A 0.74 0.01
188_V 20_Y 0.74 0.01
169_N 44_S 0.73 0.01
22_P 105_V 0.72 0.01
62_P 75_Y 0.72 0.01
176_I 28_T 0.72 0.01
192_N 105_V 0.71 0.01
187_A 22_H 0.71 0.01
76_R 6_S 0.70 0.01
169_N 106_K 0.70 0.01
120_W 50_Y 0.70 0.01
36_R 23_A 0.70 0.01
97_K 59_Y 0.69 0.01
91_V 1_M 0.69 0.01
52_L 31_T 0.69 0.01
109_K 103_L 0.68 0.01
191_P 9_K 0.68 0.01
199_R 1_M 0.68 0.01
201_T 106_K 0.67 0.01
165_V 21_I 0.67 0.01
34_V 114_V 0.66 0.01
111_R 66_L 0.66 0.01
174_D 81_D 0.65 0.01
3_G 32_I 0.65 0.01
62_P 1_M 0.64 0.01
165_V 119_C 0.64 0.01
13_R 28_T 0.64 0.01
97_K 33_T 0.64 0.01
78_L 10_V 0.64 0.01
135_H 43_S 0.63 0.01
171_E 39_P 0.63 0.01
98_P 9_K 0.63 0.01
97_K 9_K 0.63 0.01
68_A 4_K 0.63 0.01
194_G 101_S 0.63 0.01
162_A 21_I 0.62 0.01
45_T 77_M 0.62 0.01
17_D 33_T 0.62 0.01
66_H 105_V 0.62 0.01
68_A 11_K 0.62 0.01
154_K 79_S 0.62 0.01
181_L 31_T 0.62 0.01
121_N 33_T 0.62 0.01
171_E 79_S 0.61 0.01
91_V 83_I 0.61 0.01
86_P 5_P 0.61 0.01
124_G 23_A 0.61 0.01
26_I 65_A 0.61 0.01
111_R 29_I 0.61 0.01
164_R 74_A 0.61 0.01
182_L 79_S 0.61 0.01
145_K 35_P 0.60 0.00
83_D 40_I 0.60 0.00
159_H 65_A 0.60 0.00
19_R 43_S 0.60 0.00
63_L 2_A 0.60 0.00
123_A 94_A 0.60 0.00
67_F 75_Y 0.59 0.00
35_Q 30_V 0.59 0.00
103_D 23_A 0.59 0.00
75_V 24_S 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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