May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L03 - S09
UniProt: Q5SHN8 - P80374
Length: 334
Sequences: 1537
Seq/Len: 4.67
I_Prob: 0.08
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cI 3v2dE 3v2eI 3v2fEContact Map
2j002j00I 2j01E 2j02I 2j03EContact Map
4juw4juwI 4juxEContact Map
4kix4kixD 4kiyI 4kizD 4kj0I 4kj1D 4kj2I 4kj3D 4kj4IContact Map
4kj54kj5D 4kj6I 4kj7D 4kj8I 4kj9D 4kjaI 4kjbD 4kjcIContact Map
3knh3knhI 3kniE 3knjI 3knkEContact Map
3ohc3ohcI 3ohdI 3ohjE 3ohkEContact Map
3uz63uz6L 3uz7L 3uz8E 3uz9EContact Map
3u5b3u5cQ 3u5eB 3u5gQ 3u5iBContact Map
3oge3ogeI 3ogyI 3oh5E 3oh7EContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
76_R 13_A 1.09 0.08
193_G 33_F 0.77 0.03
45_T 27_T 0.76 0.03
4_I 86_V 0.73 0.02
172_V 36_Y 0.72 0.02
182_L 88_Y 0.68 0.02
33_V 89_N 0.68 0.02
67_F 54_D 0.67 0.02
49_L 30_G 0.67 0.02
21_V 51_R 0.65 0.02
4_I 49_P 0.65 0.02
31_C 53_V 0.64 0.02
132_H 109_V 0.63 0.01
159_H 23_N 0.62 0.01
116_V 43_A 0.62 0.01
63_L 91_D 0.62 0.01
60_N 81_I 0.62 0.01
106_G 9_R 0.62 0.01
33_V 121_R 0.62 0.01
159_H 80_G 0.61 0.01
162_A 27_T 0.61 0.01
196_V 54_D 0.60 0.01
89_D 121_R 0.60 0.01
101_R 125_Y 0.60 0.01
163_E 19_L 0.60 0.01
87_E 30_G 0.60 0.01
75_V 121_R 0.59 0.01
58_R 95_K 0.59 0.01
64_K 70_K 0.59 0.01
67_F 118_K 0.59 0.01
13_R 75_D 0.58 0.01
14_I 6_G 0.58 0.01
64_K 77_I 0.58 0.01
163_E 77_I 0.58 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.3015 seconds.