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OPENSEQ.org
L03 - S04
UniProt: Q5SHN8 - P80373
Length: 415
Sequences: 1202
Seq/Len: 2.92
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cD 3v2dE 3v2eD 3v2fEContact Map
2j002j00D 2j01E 2j02D 2j03EContact Map
4juw4juwD 4juxEContact Map
4kix4kixD 4kiyD 4kizD 4kj0D 4kj1D 4kj2D 4kj3D 4kj4DContact Map
4kj54kj5D 4kj6D 4kj7D 4kj8D 4kj9D 4kjaD 4kjbD 4kjcDContact Map
3ohc3ohcD 3ohdD 3ohjE 3ohkEContact Map
3knh3knhD 3kniE 3knjD 3knkEContact Map
3uz63uz6G 3uz7G 3uz8E 3uz9EContact Map
3u5b3u5cEJ 3u5eB 3u5gEJ 3u5iBContact Map
3oge3ogeD 3ogyD 3oh5E 3oh7EContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
89_D 174_L 1.04 0.01
194_G 124_G 0.91 0.01
102_V 5_I 0.89 0.01
108_S 187_R 0.85 0.01
198_V 78_L 0.85 0.01
17_D 79_F 0.83 0.01
144_R 209_R 0.82 0.01
105_T 183_G 0.82 0.01
49_L 174_L 0.79 0.01
188_V 85_K 0.79 0.01
202_K 146_I 0.79 0.01
153_G 142_P 0.76 0.01
22_P 65_R 0.73 0.01
9_V 28_S 0.73 0.01
108_S 174_L 0.72 0.01
89_D 128_V 0.70 0.00
22_P 136_P 0.69 0.00
3_G 150_E 0.68 0.00
101_R 37_P 0.68 0.00
177_P 135_L 0.68 0.00
105_T 128_V 0.67 0.00
33_V 146_I 0.67 0.00
163_E 106_Y 0.66 0.00
113_F 54_Y 0.66 0.00
199_R 168_R 0.65 0.00
38_T 148_V 0.65 0.00
113_F 10_R 0.65 0.00
84_F 132_R 0.65 0.00
36_R 149_A 0.64 0.00
47_V 53_D 0.64 0.00
193_G 160_Q 0.63 0.00
94_E 108_L 0.63 0.00
63_L 174_L 0.63 0.00
128_S 77_N 0.63 0.00
41_K 146_I 0.62 0.00
81_I 112_V 0.62 0.00
182_L 176_L 0.62 0.00
188_V 59_R 0.62 0.00
14_I 176_L 0.61 0.00
70_A 203_V 0.61 0.00
183_L 55_A 0.61 0.00
47_V 130_G 0.60 0.00
58_R 83_S 0.60 0.00
83_D 65_R 0.60 0.00
197_I 199_N 0.60 0.00
193_G 25_R 0.59 0.00
72_V 113_S 0.59 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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