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OPENSEQ.org
L03 - S02
UniProt: Q5SHN8 - P80371
Length: 462
Sequences: 1488
Seq/Len: 3.45
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2dE 3v2eB 3v2fEContact Map
2j002j00B 2j01E 2j02B 2j03EContact Map
4juw4juwB 4juxEContact Map
4kix4kixD 4kiyB 4kizD 4kj0B 4kj1D 4kj2B 4kj3D 4kj4BContact Map
4kj54kj5D 4kj6B 4kj7D 4kj8B 4kj9D 4kjaB 4kjbD 4kjcBContact Map
3knh3knhB 3kniE 3knjB 3knkEContact Map
3ohc3ohcB 3ohdB 3ohjE 3ohkEContact Map
3uz63uz6E 3uz7E 3uz8E 3uz9EContact Map
3u5b3u5cA 3u5eB 3u5gA 3u5iBContact Map
3oge3ogeB 3ogyB 3oh5E 3oh7EContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
196_V 179_K 0.90 0.00
193_G 140_H 0.89 0.00
62_P 57_F 0.84 0.00
5_L 197_V 0.81 0.00
120_W 29_A 0.80 0.00
198_V 154_L 0.79 0.00
9_V 186_A 0.78 0.00
185_K 50_E 0.78 0.00
172_V 4_E 0.78 0.00
187_A 181_F 0.77 0.00
159_H 215_L 0.77 0.00
92_T 128_E 0.77 0.00
37_R 174_V 0.74 0.00
89_D 91_P 0.74 0.00
1_M 185_I 0.74 0.00
67_F 144_R 0.73 0.00
128_S 81_V 0.72 0.00
132_H 88_A 0.71 0.00
104_V 185_I 0.70 0.00
184_V 52_E 0.70 0.00
20_A 118_L 0.70 0.00
150_V 172_I 0.70 0.00
19_R 52_E 0.69 0.00
160_Y 88_A 0.69 0.00
172_V 223_I 0.69 0.00
105_T 154_L 0.68 0.00
192_N 218_A 0.68 0.00
171_E 58_I 0.67 0.00
172_V 113_H 0.67 0.00
172_V 52_E 0.67 0.00
202_K 56_R 0.67 0.00
128_S 154_L 0.66 0.00
63_L 199_Y 0.66 0.00
58_R 200_I 0.66 0.00
22_P 69_L 0.65 0.00
150_V 198_D 0.65 0.00
135_H 94_N 0.65 0.00
38_T 165_V 0.65 0.00
6_G 57_F 0.64 0.00
36_R 175_R 0.64 0.00
103_D 13_A 0.64 0.00
17_D 43_D 0.64 0.00
50_G 136_V 0.64 0.00
159_H 147_K 0.64 0.00
193_G 128_E 0.63 0.00
34_V 223_I 0.63 0.00
156_M 188_A 0.63 0.00
9_V 137_R 0.63 0.00
14_I 141_E 0.63 0.00
185_K 83_M 0.63 0.00
172_V 225_A 0.63 0.00
134_I 8_K 0.63 0.00
31_C 43_D 0.63 0.00
199_R 184_V 0.62 0.00
144_R 144_R 0.62 0.00
132_H 148_Y 0.62 0.00
128_S 163_F 0.62 0.00
108_S 79_D 0.62 0.00
182_L 6_T 0.61 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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