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OPENSEQ.org

L03 - L32
UniProt: Q5SHN8 - P80339
Length: 266
Sequences: 907
Seq/Len: 3.49
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dE5 3v2fE5Contact Map
2j002j01E5 2j03E5Contact Map
4juw4juxE5Contact Map
4kix4kixD0 4kizD0 4kj1D0 4kj3D0Contact Map
4kj54kj5D0 4kj7D0 4kj9D0 4kjbD0Contact Map
2zjr2zjrBZContact Map
4btc4btdE5Contact Map
3uyd3uyeE5 3uygE5Contact Map
4gd13r8sD0 3r8tD0Contact Map
3knh3kniE5 3knkE5Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
128_S 54_G 1.07 0.03
152_K 19_R 0.99 0.03
132_H 21_S 0.90 0.02
144_R 10_K 0.87 0.02
153_G 8_K 0.86 0.02
170_L 55_R 0.85 0.02
178_E 37_K 0.84 0.02
148_G 8_K 0.84 0.02
107_T 10_K 0.83 0.01
126_P 45_V 0.82 0.01
153_G 11_T 0.80 0.01
136_R 19_R 0.79 0.01
169_N 34_P 0.79 0.01
159_H 23_H 0.76 0.01
61_R 26_T 0.75 0.01
149_R 36_C 0.74 0.01
134_I 44_T 0.74 0.01
79_R 8_K 0.73 0.01
78_L 8_K 0.72 0.01
48_Q 20_R 0.72 0.01
50_G 33_C 0.70 0.01
182_L 10_K 0.70 0.01
133_K 6_V 0.70 0.01
99_G 16_R 0.70 0.01
124_G 9_K 0.69 0.01
69_K 45_V 0.67 0.01
1_M 10_K 0.67 0.01
59_V 21_S 0.66 0.01
172_V 35_E 0.65 0.01
196_V 15_R 0.64 0.01
9_V 13_K 0.64 0.01
46_A 58_L 0.64 0.01
194_G 10_K 0.64 0.01
174_D 55_R 0.64 0.01
162_A 31_V 0.64 0.01
98_P 36_C 0.64 0.01
181_L 8_K 0.63 0.01
53_P 34_P 0.63 0.01
40_E 14_A 0.63 0.01
3_G 22_H 0.62 0.01
149_R 57_V 0.61 0.01
42_D 20_R 0.61 0.01
33_V 10_K 0.61 0.01
4_I 53_A 0.61 0.01
148_G 6_V 0.61 0.01
3_G 6_V 0.60 0.01
157_A 12_S 0.60 0.01
132_H 5_P 0.60 0.01
154_K 16_R 0.60 0.01
41_K 55_R 0.60 0.01
122_F 5_P 0.59 0.01
124_G 8_K 0.59 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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