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OPENSEQ.org
L03 - L28
UniProt: Q5SHN8 - P60494
Length: 304
Sequences: 1026
Seq/Len: 3.86
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dE1 3v2fE1Contact Map
2j002j01E1 2j03E1Contact Map
4juw4juxE1Contact Map
4kix4kixDX 4kizDX 4kj1DX 4kj3DXContact Map
4kj54kj5DX 4kj7DX 4kj9DX 4kjbDXContact Map
2zjr2zjrBUContact Map
4btc4btdE1Contact Map
3uyd3uyeEZ 3uygEZContact Map
4gd13r8sDX 3r8tDXContact Map
3knh3kniE1 3knkE1Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
58_R 12_P 0.94 0.01
108_S 39_K 0.88 0.01
97_K 62_V 0.81 0.00
108_S 11_R 0.79 0.00
188_V 61_R 0.77 0.00
84_F 59_T 0.76 0.00
193_G 39_K 0.76 0.00
128_S 67_I 0.74 0.00
140_S 20_R 0.74 0.00
155_K 67_I 0.72 0.00
50_G 49_V 0.72 0.00
201_T 68_P 0.71 0.00
82_R 50_R 0.71 0.00
147_P 5_C 0.69 0.00
111_R 5_C 0.69 0.00
152_K 49_V 0.67 0.00
47_V 69_K 0.66 0.00
37_R 50_R 0.66 0.00
132_H 39_K 0.66 0.00
29_G 64_A 0.65 0.00
192_N 18_I 0.65 0.00
9_V 14_V 0.65 0.00
193_G 36_G 0.64 0.00
196_V 12_P 0.64 0.00
109_K 53_V 0.64 0.00
140_S 19_Q 0.63 0.00
81_I 68_P 0.63 0.00
174_D 56_Q 0.62 0.00
136_R 64_A 0.62 0.00
193_G 16_N 0.62 0.00
91_V 36_G 0.61 0.00
149_R 4_V 0.61 0.00
195_L 68_P 0.61 0.00
198_V 48_K 0.59 0.00
9_V 46_L 0.59 0.00
172_V 36_G 0.59 0.00
177_P 55_G 0.59 0.00
52_L 68_P 0.59 0.00
14_I 6_E 0.58 0.00
26_I 11_R 0.58 0.00
178_E 48_K 0.58 0.00
102_V 20_R 0.58 0.00
19_R 68_P 0.57 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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