May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L03 - L27
UniProt: Q5SHN8 - P60493
Length: 291
Sequences: 1342
Seq/Len: 4.68
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2dE0 3v2fE0Contact Map
2j002j01E0 2j03E0Contact Map
4juw4juxE0Contact Map
4kix4kixDW 4kizDW 4kj1DW 4kj3DWContact Map
4kj54kj5DW 4kj7DW 4kj9DW 4kjbDWContact Map
2zjr2zjrBTContact Map
4btc4btdE0Contact Map
3uyd3uyeE3 3uygE3Contact Map
4gd13r8sDW 3r8tDWContact Map
3knh3kniE0 3knkE0Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
140_S 60_F 0.85 0.00
182_L 83_P 0.85 0.00
141_I 1_M 0.81 0.00
97_K 32_R 0.79 0.00
31_C 3_H 0.77 0.00
15_F 19_K 0.75 0.00
147_P 4_K 0.74 0.00
113_F 2_A 0.72 0.00
144_R 3_H 0.71 0.00
145_K 6_G 0.69 0.00
85_N 47_P 0.68 0.00
135_H 25_R 0.67 0.00
79_R 69_F 0.66 0.00
83_D 74_R 0.65 0.00
101_R 11_R 0.64 0.00
19_R 55_R 0.64 0.00
149_R 37_L 0.63 0.00
167_V 66_V 0.63 0.00
172_V 83_P 0.62 0.00
145_K 57_F 0.61 0.00
97_K 18_A 0.61 0.00
87_E 81_V 0.60 0.00
100_E 27_E 0.59 0.00
91_V 80_H 0.58 0.00
7_V 60_F 0.58 0.00
51_F 82_R 0.57 0.00
20_A 38_V 0.57 0.00
17_D 82_R 0.57 0.00
21_V 2_A 0.57 0.00
128_S 68_E 0.56 0.00
156_M 27_E 0.56 0.00
199_R 81_V 0.56 0.00
21_V 63_V 0.55 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 1.3136 seconds.