May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L03 - S07
UniProt: Q5SHN8 - P17291
Length: 362
Sequences: 1412
Seq/Len: 3.93
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cG 3v2dE 3v2eG 3v2fEContact Map
2j002j00G 2j01E 2j02G 2j03EContact Map
4juw4juwG 4juxEContact Map
4kix4kixD 4kiyG 4kizD 4kj0G 4kj1D 4kj2G 4kj3D 4kj4GContact Map
4kj54kj5D 4kj6G 4kj7D 4kj8G 4kj9D 4kjaG 4kjbD 4kjcGContact Map
3ohc3ohcG 3ohdG 3ohjE 3ohkEContact Map
3knh3knhG 3kniE 3knjG 3knkEContact Map
3uz63uz6J 3uz7J 3uz8E 3uz9EContact Map
3oge3ogeG 3ogyG 3oh5E 3oh7EContact Map
3uyd3uydJ 3uyeE 3uyfJ 3uygEContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
22_P 139_E 0.97 0.01
71_G 143_R 0.93 0.01
127_D 77_S 0.89 0.01
154_K 13_Q 0.85 0.01
20_A 143_R 0.83 0.01
120_W 119_R 0.82 0.01
150_V 111_R 0.81 0.01
159_H 67_E 0.79 0.01
30_P 121_A 0.78 0.01
155_K 41_R 0.78 0.01
150_V 113_E 0.78 0.01
14_I 36_K 0.78 0.01
128_S 117_A 0.77 0.01
78_L 4_R 0.77 0.01
21_V 138_K 0.76 0.01
144_R 140_D 0.72 0.01
47_V 91_V 0.72 0.01
160_Y 4_R 0.71 0.01
62_P 21_V 0.70 0.01
152_K 69_V 0.69 0.01
197_I 36_K 0.69 0.01
86_P 4_R 0.69 0.01
79_R 152_A 0.69 0.01
17_D 57_E 0.68 0.01
124_G 77_S 0.68 0.01
148_G 23_V 0.67 0.01
16_R 30_I 0.67 0.01
126_P 131_K 0.67 0.01
91_V 32_R 0.67 0.01
200_E 101_L 0.66 0.00
196_V 50_I 0.66 0.00
72_V 97_Q 0.66 0.00
182_L 106_Q 0.65 0.00
166_T 47_C 0.65 0.00
9_V 154_Y 0.65 0.00
91_V 52_E 0.64 0.00
199_R 138_K 0.64 0.00
95_I 100_A 0.64 0.00
168_M 134_A 0.64 0.00
18_D 134_A 0.63 0.00
107_T 7_A 0.63 0.00
57_K 58_P 0.63 0.00
178_E 83_A 0.63 0.00
155_K 140_D 0.63 0.00
53_P 124_L 0.63 0.00
72_V 13_Q 0.62 0.00
55_N 50_I 0.62 0.00
144_R 156_W 0.62 0.00
71_G 124_L 0.62 0.00
198_V 101_L 0.62 0.00
109_K 2_A 0.62 0.00
89_D 30_I 0.62 0.00
179_E 111_R 0.62 0.00
120_W 154_Y 0.62 0.00
62_P 69_V 0.62 0.00
22_P 12_L 0.62 0.00
196_V 64_Q 0.62 0.00
108_S 89_M 0.62 0.00
79_R 66_V 0.61 0.00
86_P 58_P 0.61 0.00
40_E 48_K 0.61 0.00
49_L 62_F 0.61 0.00
41_K 104_L 0.61 0.00
25_V 76_R 0.61 0.00
117_M 96_Q 0.61 0.00
34_V 59_L 0.60 0.00
146_T 64_Q 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4889 seconds.