May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
S10 - S20
UniProt: Q5SHN7 - P80380
Length: 211
Sequences: 981
Seq/Len: 5.30
I_Prob: 0.03
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeJTContact Map
3v2c3v2cJT 3v2eJTContact Map
2uub2uubJTContact Map
2j002j00JT 2j02JTContact Map
3t1y3t1yJTContact Map
4juw4juwJTContact Map
2uua2uuaJTContact Map
4b3m4b3mJTContact Map
2uxc2uxcJTContact Map
4kix4kiyJT 4kj0JT 4kj2JT 4kj4JTContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
16_L 79_R 1.01 0.03
45_R 39_K 1.01 0.03
67_T 35_T 0.99 0.03
31_G 52_A 0.88 0.02
38_I 8_R 0.88 0.02
83_E 84_L 0.87 0.02
16_L 84_L 0.87 0.02
12_D 8_R 0.81 0.01
10_G 41_I 0.78 0.01
10_G 83_R 0.75 0.01
91_P 73_H 0.74 0.01
29_R 39_K 0.73 0.01
33_Q 45_Q 0.73 0.01
13_H 70_S 0.72 0.01
65_L 66_A 0.72 0.01
7_K 31_S 0.72 0.01
20_A 10_L 0.71 0.01
65_L 16_H 0.70 0.01
66_R 31_S 0.69 0.01
83_E 76_A 0.69 0.01
11_F 19_S 0.69 0.01
38_I 33_I 0.68 0.01
11_F 31_S 0.68 0.01
53_P 81_K 0.67 0.01
91_P 64_D 0.67 0.01
66_R 30_K 0.67 0.01
43_R 67_A 0.67 0.01
29_R 67_A 0.67 0.01
15_T 38_K 0.66 0.01
48_T 71_T 0.66 0.01
72_V 13_L 0.65 0.01
28_R 19_S 0.65 0.01
58_D 9_N 0.64 0.01
9_R 9_N 0.64 0.01
11_F 92_L 0.64 0.01
35_S 89_R 0.64 0.01
50_I 15_R 0.64 0.01
54_F 29_K 0.63 0.01
35_S 65_K 0.63 0.01
57_K 11_S 0.63 0.01
48_T 76_A 0.63 0.01
33_Q 61_S 0.62 0.01
92_T 80_R 0.62 0.01
71_L 49_A 0.61 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4138 seconds.