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OPENSEQ.org
4HEA_3 - 4HEA_9
UniProt: Q56223 - Q56224 Query Sequences:

 Download Alignment
We filter this alignment to remove positions that have > 75% gaps before running GREMLIN.
Length: 965
Sequences: 2306
Seq/Len: 2.71
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3ias3UCL:9YGPContact Map
3i9v3C:9GContact Map
2fug3CLU:9YPGContact Map
3m9s3C:9GContact Map
4hea3D:9OContact Map
3iam3C:9GContact Map
2ybb3:8Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
397_L 105_E 0.69 0.00
708_A 54_I 0.63 0.00
397_L 97_R 0.60 0.00
497_W 72_P 0.58 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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