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OPENSEQ.org

MMUM - RFFA
UniProt: Q47690 - P27833
Length: 686
Sequences: 481
Seq/Len: 0.73
I_Prob: 0.00

MMUM - Homocysteine S-methyltransferase
Paralog alert: 0.27 [within 20: 0.04] - ratio of genomes with paralogs
Cluster includes: MMUM
RFFA - Lipopolysaccharide biosynthesis protein RffA
Paralog alert: 0.93 [within 20: 0.55] - ratio of genomes with paralogs
Cluster includes: AAT ALAA ALAC ARNB AVTA CSDA HIS8 ISCS MALY RFFA SERC SUFS TYRB YBDL YDCR YJIR
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
156_A 74_V 1.16 0.00
61_A 137_T 1.00 0.00
181_E 74_V 0.99 0.00
70_S 121_R 0.95 0.00
97_E 234_L 0.94 0.00
154_V 364_Q 0.94 0.00
243_H 146_N 0.94 0.00
73_A 118_D 0.94 0.00
292_I 264_Y 0.94 0.00
292_I 146_N 0.92 0.00
243_H 109_E 0.90 0.00
22_A 232_S 0.86 0.00
60_R 197_K 0.82 0.00
95_S 66_L 0.81 0.00
183_L 272_A 0.81 0.00
244_G 315_I 0.80 0.00
118_V 121_R 0.78 0.00
304_A 114_A 0.78 0.00
45_V 244_W 0.78 0.00
292_I 301_D 0.78 0.00
271_G 119_K 0.78 0.00
299_T 40_L 0.77 0.00
165_L 160_T 0.76 0.00
281_L 362_V 0.75 0.00
162_A 199_L 0.75 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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