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OPENSEQ.org

ISPD - ISPF
UniProt: Q46893 - P62617
Length: 395
Sequences: 650
Seq/Len: 1.71
I_Prob: 0.00

ISPD - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Paralog alert: 0.09 [within 20: 0.03] - ratio of genomes with paralogs
Cluster includes: ISPD
ISPF - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
Paralog alert: 0.01 [within 20: 0.00] - ratio of genomes with paralogs
Cluster includes: ISPF
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
56_I 116_I 1.12 0.00
45_L 40_A 0.91 0.00
36_T 37_G 0.90 0.00
32_I 125_D 0.89 0.00
68_L 17_P 0.89 0.00
36_T 16_G 0.88 0.00
222_L 17_P 0.87 0.00
161_W 128_N 0.87 0.00
132_I 53_A 0.86 0.00
96_A 85_Q 0.85 0.00
115_D 124_M 0.85 0.00
136_P 26_P 0.84 0.00
84_E 60_L 0.83 0.00
211_N 73_S 0.83 0.00
206_E 27_Y 0.83 0.00
110_P 131_A 0.81 0.00
96_A 99_I 0.81 0.00
81_G 93_N 0.80 0.00
131_G 78_R 0.80 0.00
12_V 143_G 0.80 0.00
7_D 104_K 0.79 0.00
221_A 83_R 0.78 0.00
164_L 33_A 0.78 0.00
214_V 80_A 0.77 0.00
121_L 15_E 0.77 0.00
134_A 27_Y 0.77 0.00
98_D 70_G 0.77 0.00
84_E 18_I 0.76 0.00
211_N 130_K 0.76 0.00
211_N 95_D 0.76 0.00
15_A 93_N 0.76 0.00
86_A 37_G 0.75 0.00
211_N 50_G 0.75 0.00
59_S 127_V 0.75 0.00
10_A 99_I 0.74 0.00
75_Q 1_M 0.74 0.00
211_N 62_P 0.74 0.00
145_E 118_E 0.74 0.00
112_L 68_F 0.74 0.00
51_V 127_V 0.73 0.00
207_G 93_N 0.73 0.00
110_P 145_G 0.72 0.00
89_V 147_A 0.72 0.00
9_C 37_G 0.72 0.00
216_R 12_F 0.71 0.00
216_R 107_P 0.71 0.00
226_Y 37_G 0.71 0.00
137_V 67_A 0.71 0.00
132_I 1_M 0.70 0.00
37_I 11_A 0.70 0.00
211_N 135_E 0.70 0.00
94_K 104_K 0.70 0.00
191_E 45_T 0.69 0.00
107_A 97_T 0.69 0.00
95_A 3_I 0.68 0.00
214_V 137_L 0.68 0.00
147_G 110_P 0.68 0.00
180_R 89_Y 0.68 0.00
162_H 116_I 0.67 0.00
36_T 33_A 0.67 0.00
223_A 152_A 0.67 0.00
102_V 79_E 0.67 0.00
38_L 127_V 0.66 0.00
223_A 27_Y 0.66 0.00
201_H 80_A 0.66 0.00
9_C 60_L 0.66 0.00
147_G 114_V 0.66 0.00
170_P 20_I 0.66 0.00
11_V 86_A 0.66 0.00
91_A 3_I 0.66 0.00
214_V 70_G 0.65 0.00
131_G 119_D 0.65 0.00
77_T 98_I 0.65 0.00
57_A 12_F 0.65 0.00
137_V 146_I 0.65 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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