May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org

GPR - YQHC
UniProt: Q46851 - Q46855
Length: 664
Sequences: 486
Seq/Len: 0.80
I_Prob: 0.00

GPR - L-glyceraldehyde 3-phosphate reductase
Paralog alert: 0.76 [within 20: 0.18] - ratio of genomes with paralogs
Cluster includes: DKGA DKGB GPR TAS YAJO YDBC YDHF YDJG YEAE
YQHC - Uncharacterized HTH-type transcriptional regulator YqhC
Paralog alert: 0.75 [within 20: 0.10] - ratio of genomes with paralogs
Cluster includes: ADIY APPY ARAC CHBR ENVY EUTR FEAR GADW GADX MARA MELR RHAR RHAS SOXS YBCM YDEO YDIP YEAM YIDL YIJO YKGD YPDC YQHC
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution.

Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
278_G 237_N 1.13 0.00
280_S 87_F 0.99 0.00
158_Q 304_T 0.98 0.00
308_L 302_G 0.96 0.00
54_D 281_A 0.95 0.00
47_A 234_A 0.86 0.00
158_Q 225_E 0.82 0.00
218_G 173_L 0.82 0.00
49_L 163_E 0.81 0.00
162_A 116_A 0.81 0.00
183_R 298_K 0.80 0.00
118_A 304_T 0.80 0.00
210_D 266_K 0.79 0.00
321_S 252_S 0.79 0.00
116_L 270_M 0.78 0.00
92_L 229_V 0.78 0.00
313_Q 284_R 0.77 0.00
135_F 156_E 0.77 0.00
237_G 70_I 0.77 0.00
330_Q 275_G 0.77 0.00
218_G 283_M 0.77 0.00
318_L 227_L 0.76 0.00
96_T 162_A 0.76 0.00
305_A 120_L 0.76 0.00
284_M 240_V 0.76 0.00
268_R 252_S 0.76 0.00
54_D 299_R 0.75 0.00
16_R 104_E 0.74 0.00
289_L 50_V 0.74 0.00
41_A 222_K 0.74 0.00
78_G 230_E 0.74 0.00
13_M 298_K 0.74 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

Page generated in 1.0107 seconds.