May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
S04 - S08
UniProt: P80373 - Q5SHQ2
Length: 347
Sequences: 1327
Seq/Len: 3.91
I_Prob: 0.02
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeDHContact Map
3v2c3v2cDH 3v2eDHContact Map
2uub2uubDHContact Map
2j002j00DH 2j02DHContact Map
3t1y3t1yDHContact Map
4juw4juwDHContact Map
2uua2uuaDHContact Map
4b3m4b3mDHContact Map
2uxc2uxcDHContact Map
4kix4kiyDH 4kj0DH 4kj2DH 4kj4DHContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
128_V 102_R 1.02 0.02
77_N 38_I 0.89 0.01
188_L 109_I 0.75 0.01
175_S 13_I 0.74 0.01
141_R 62_Y 0.73 0.01
182_K 17_T 0.72 0.01
99_S 91_R 0.72 0.01
147_A 134_I 0.72 0.01
33_M 113_S 0.70 0.01
113_S 125_R 0.70 0.01
175_S 127_L 0.69 0.01
209_R 19_V 0.69 0.01
162_L 119_L 0.68 0.01
185_F 105_R 0.68 0.01
106_Y 3_T 0.67 0.01
33_M 133_L 0.67 0.01
65_R 118_V 0.67 0.01
10_R 28_A 0.66 0.01
104_V 86_I 0.66 0.01
171_G 134_I 0.65 0.01
149_A 24_T 0.65 0.01
209_R 115_S 0.65 0.01
149_A 99_E 0.64 0.01
70_I 62_Y 0.64 0.01
121_V 7_A 0.63 0.01
128_V 62_Y 0.63 0.01
146_I 55_G 0.63 0.01
78_L 105_R 0.63 0.01
52_S 115_S 0.63 0.01
187_R 100_I 0.63 0.01
11_L 19_V 0.62 0.01
52_S 1_M 0.61 0.01
94_L 49_E 0.61 0.01
128_V 111_I 0.61 0.01
193_D 110_A 0.60 0.01
187_R 135_C 0.60 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.8636 seconds.