OPENSEQ.org
S04 - S14
UniProt: P80373 - Q5SHQ1
Length: 270
Sequences: 1216
Seq/Len: 4.52
I_Prob: 0.00
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeDNContact Map
3v2c3v2cDN 3v2eDNContact Map
2uub2uubDNContact Map
2j002j00DN 2j02DNContact Map
3t1y3t1yDNContact Map
4juw4juwDNContact Map
2uua2uuaDNContact Map
4b3m4b3mDNContact Map
2uxc2uxcDNContact Map
4kix4kiyDN 4kj0DN 4kj2DN 4kj4DNContact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
11_L 56_V 0.89 0.00
65_R 49_H 0.87 0.00
206_F 16_F 0.84 0.00
12_C 22_T 0.80 0.00
191_R 41_R 0.77 0.00
49_R 48_A 0.75 0.00
7_P 59_A 0.71 0.00
208_S 24_C 0.70 0.00
47_R 32_S 0.69 0.00
179_E 59_A 0.69 0.00
192_E 50_K 0.68 0.00
94_L 42_I 0.67 0.00
168_R 32_S 0.67 0.00
108_L 37_F 0.67 0.00
39_P 31_R 0.66 0.00
116_Q 27_C 0.66 0.00
65_R 18_V 0.64 0.00
79_F 31_R 0.64 0.00
143_G 51_G 0.64 0.00
193_D 47_L 0.63 0.00
6_G 17_K 0.62 0.00
117_A 33_V 0.62 0.00
88_V 53_L 0.62 0.00
108_L 16_F 0.61 0.00
55_A 38_G 0.61 0.00
78_L 52_Q 0.61 0.00
176_L 39_L 0.60 0.00
57_R 36_F 0.60 0.00
174_L 16_F 0.60 0.00
203_V 34_Y 0.60 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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