May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
S03 - S14
UniProt: P80372 - Q5SHQ1
Length: 300
Sequences: 1051
Seq/Len: 3.86
I_Prob: 0.99
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
2vqe2vqeCNContact Map
3v2c3v2cCN 3v2eCNContact Map
2uub2uubCNContact Map
2j002j00CN 2j02CNContact Map
3t1y3t1yCNContact Map
4juw4juwCNContact Map
2uua2uuaCNContact Map
4b3m4b3mCNContact Map
2uxc2uxcCNContact Map
4kix4kiyCN 4kj0CN 4kj2CN 4kj4CNContact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
29_Y 53_L 2.29 0.99
34_L 25_V 1.60 0.94
34_L 39_L 1.56 0.93
5_I 49_H 1.44 0.89
33_L 53_L 1.39 0.87
31_H 25_V 1.39 0.87
10_F 49_H 1.23 0.77
37_Q 47_L 1.21 0.75
6_H 49_H 1.05 0.60
6_H 50_K 1.05 0.59
30_R 25_V 1.03 0.58
8_I 51_G 1.00 0.54
34_L 38_G 0.96 0.49
19_E 52_Q 0.96 0.48
146_A 59_A 0.93 0.44
18_W 53_L 0.92 0.44
9_G 49_H 0.91 0.42
109_P 59_A 0.90 0.41
106_V 57_R 0.86 0.36
20_S 10_A 0.85 0.36
158_G 59_A 0.83 0.33
29_Y 34_Y 0.83 0.33
135_K 26_R 0.83 0.33
30_R 38_G 0.82 0.32
37_Q 39_L 0.82 0.32
185_G 40_C 0.81 0.30
94_L 53_L 0.81 0.30
129_A 24_C 0.80 0.29
140_R 49_H 0.79 0.28
13_G 57_R 0.77 0.27
198_V 17_K 0.77 0.26
72_K 49_H 0.77 0.26
61_A 37_F 0.77 0.26
173_V 39_L 0.76 0.25
23_Y 21_Y 0.75 0.24
124_I 36_F 0.75 0.24
39_I 59_A 0.74 0.23
141_V 48_A 0.74 0.23
52_L 35_R 0.74 0.23
30_R 37_F 0.73 0.22
144_S 32_S 0.73 0.22
192_T 43_C 0.73 0.22
139_Q 33_V 0.73 0.22
161_E 37_F 0.73 0.22
26_K 42_I 0.71 0.20
110_N 31_R 0.70 0.19
150_K 32_S 0.70 0.19
134_I 38_G 0.70 0.19
89_E 5_A 0.70 0.19
206_E 42_I 0.69 0.19
122_E 26_R 0.69 0.18
31_H 38_G 0.69 0.18
154_S 18_V 0.69 0.18
150_K 41_R 0.68 0.17
211_Q 13_T 0.68 0.17
205_G 26_R 0.67 0.17
176_H 46_E 0.67 0.16
198_V 20_A 0.67 0.16
80_G 49_H 0.67 0.16
189_A 58_K 0.66 0.16
14_I 30_A 0.66 0.15
114_P 26_R 0.65 0.15
91_L 18_V 0.65 0.15
91_L 47_L 0.64 0.14
16_R 34_Y 0.63 0.14
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.9416 seconds.