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OPENSEQ.org
L34 - S18
UniProt: P80340 - Q5SLQ0
Length: 137
Sequences: 683
Seq/Len: 6.04
I_Prob: 0.81
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cR 3v2d7 3v2eR 3v2f7Contact Map
2j002j00R 2j017 2j02R 2j037Contact Map
3uyd3uydU 3uye7 3uyfU 3uyg7Contact Map
3ohc3ohcR 3ohdR 3ohj7 3ohk7Contact Map
3knh3knhR 3kni7 3knjR 3knk7Contact Map
3ohy3ohyR 3ohz7 3oi0R 3oi17Contact Map
3f1e3f1eR 3f1f7 3f1gR 3f1h7Contact Map
3v223v22R 3v237 3v24R 3v257Contact Map
3uz63uz6U 3uz7U 3uz87 3uz97Contact Map
3oge3ogeR 3ogyR 3oh57 3oh77Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
15_T 82_T 1.46 0.81
11_K 61_K 1.05 0.46
8_N 23_K 1.01 0.41
12_R 46_E 0.94 0.34
19_R 56_T 0.88 0.27
32_K 21_K 0.86 0.26
8_N 43_F 0.83 0.23
42_L 33_D 0.82 0.22
10_R 53_R 0.79 0.19
22_M 44_L 0.78 0.19
2_K 18_R 0.77 0.18
3_R 44_L 0.75 0.17
20_A 60_A 0.75 0.17
1_M 70_I 0.75 0.17
11_K 30_D 0.74 0.16
8_N 46_E 0.74 0.16
1_M 55_R 0.74 0.16
25_P 38_E 0.73 0.15
33_R 66_L 0.72 0.14
24_T 84_K 0.71 0.14
43_T 45_S 0.71 0.14
29_K 82_T 0.71 0.14
1_M 52_P 0.70 0.13
42_L 20_A 0.68 0.12
43_T 81_F 0.68 0.12
12_R 49_K 0.68 0.12
33_R 19_K 0.68 0.12
11_K 45_S 0.67 0.12
10_R 76_L 0.67 0.11
13_A 77_G 0.67 0.11
19_R 51_L 0.66 0.11
6_Q 73_A 0.64 0.10
22_M 51_L 0.64 0.10
37_K 62_E 0.63 0.10
40_W 55_R 0.63 0.09
3_R 83_E 0.62 0.09
31_L 84_K 0.62 0.09
9_R 42_R 0.62 0.09
32_K 84_K 0.62 0.09
31_L 81_F 0.62 0.09
11_K 26_L 0.62 0.09
20_A 83_E 0.62 0.09
14_K 30_D 0.61 0.09
8_N 51_L 0.61 0.08
4_T 72_R 0.60 0.08
11_K 57_G 0.60 0.08
16_H 83_E 0.59 0.08
19_R 38_E 0.59 0.08
44_P 37_V 0.58 0.07
23_R 43_F 0.58 0.07
22_M 67_A 0.58 0.07
36_Q 23_K 0.57 0.07
26_G 67_A 0.57 0.07
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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