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OPENSEQ.org
L34 - S06
UniProt: P80340 - Q5SLP8
Length: 150
Sequences: 969
Seq/Len: 6.78
I_Prob: 0.47
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cF 3v2d7 3v2eF 3v2f7Contact Map
2j002j00F 2j017 2j02F 2j037Contact Map
4juw4juwF 4jux7Contact Map
4kix4kix2 4kiyF 4kiz2 4kj0F 4kj12 4kj2F 4kj32 4kj4FContact Map
4kj54kj52 4kj6F 4kj72 4kj8F 4kj92 4kjaF 4kjb2 4kjcFContact Map
3uyd3uydI 3uye7 3uyfI 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1F 4gd2FContact Map
3knh3knhF 3kni7 3knjF 3knk7Contact Map
3ohc3ohcF 3ohdF 3ohj7 3ohk7Contact Map
3f1e3f1eF 3f1f7 3f1gF 3f1h7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
37_K 46_R 1.27 0.47
8_N 57_Q 1.03 0.26
14_K 59_Y 0.89 0.17
19_R 10_L 0.88 0.16
10_R 9_V 0.88 0.15
10_R 57_Q 0.87 0.15
6_Q 43_L 0.83 0.13
24_T 37_V 0.81 0.12
3_R 72_V 0.79 0.11
6_Q 41_E 0.76 0.10
12_R 79_L 0.75 0.10
32_K 31_E 0.75 0.09
8_N 82_R 0.74 0.09
44_P 34_G 0.73 0.09
41_R 80_R 0.69 0.07
2_K 79_L 0.68 0.07
10_R 15_D 0.68 0.07
26_G 53_A 0.68 0.07
15_T 12_P 0.67 0.07
36_Q 25_I 0.67 0.07
44_P 69_E 0.66 0.06
14_K 95_E 0.66 0.06
10_R 8_I 0.66 0.06
29_K 72_V 0.65 0.06
5_W 37_V 0.65 0.06
19_R 42_E 0.65 0.06
3_R 79_L 0.65 0.06
7_P 74_D 0.64 0.06
15_T 55_D 0.64 0.06
38_G 85_V 0.64 0.06
31_L 70_D 0.64 0.06
16_H 43_L 0.63 0.06
15_T 81_I 0.63 0.05
44_P 76_A 0.63 0.05
19_R 90_V 0.62 0.05
11_K 72_V 0.62 0.05
32_K 56_P 0.62 0.05
11_K 30_L 0.62 0.05
23_R 53_A 0.62 0.05
8_N 7_N 0.61 0.05
36_Q 16_Q 0.61 0.05
13_A 85_V 0.61 0.05
36_Q 10_L 0.61 0.05
31_L 50_Y 0.60 0.05
37_K 60_F 0.60 0.05
33_R 95_E 0.60 0.05
31_L 38_E 0.60 0.05
33_R 63_Y 0.60 0.05
22_M 52_I 0.60 0.05
12_R 6_V 0.59 0.04
26_G 23_K 0.58 0.04
10_R 47_R 0.58 0.04
41_R 27_Q 0.58 0.04
15_T 57_Q 0.58 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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