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OPENSEQ.org
L34 - S16
UniProt: P80340 - Q5SJH3
Length: 137
Sequences: 942
Seq/Len: 7.25
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cP 3v2d7 3v2eP 3v2f7Contact Map
2j002j00P 2j017 2j02P 2j037Contact Map
4juw4juwP 4jux7Contact Map
4kix4kix2 4kiyP 4kiz2 4kj0P 4kj12 4kj2P 4kj32 4kj4PContact Map
4kj54kj52 4kj6P 4kj72 4kj8P 4kj92 4kjaP 4kjb2 4kjcPContact Map
3uyd3uydS 3uye7 3uyfS 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1P 4gd2PContact Map
3knh3knhP 3kni7 3knjP 3knk7Contact Map
3ohc3ohcP 3ohdP 3ohj7 3ohk7Contact Map
3ohy3ohyP 3ohz7 3oi0P 3oi17Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
19_R 13_H 0.86 0.01
15_T 44_T 0.74 0.00
30_V 69_T 0.72 0.00
9_R 1_M 0.71 0.00
44_P 48_W 0.67 0.00
28_R 25_R 0.66 0.00
37_K 74_L 0.62 0.00
9_R 81_R 0.61 0.00
20_A 27_K 0.61 0.00
8_N 32_Y 0.61 0.00
1_M 76_Q 0.58 0.00
24_T 61_S 0.57 0.00
41_R 38_Y 0.56 0.00
2_K 60_L 0.56 0.00
41_R 40_D 0.56 0.00
1_M 43_K 0.56 0.00
16_H 32_Y 0.56 0.00
30_V 3_K 0.55 0.00
20_A 17_Y 0.55 0.00
38_G 54_E 0.55 0.00
41_R 48_W 0.54 0.00
45_A 18_R 0.53 0.00
20_A 60_L 0.53 0.00
12_R 55_R 0.53 0.00
33_R 14_N 0.53 0.00
26_G 31_K 0.52 0.00
25_P 42_R 0.51 0.00
19_R 25_R 0.51 0.00
26_G 15_P 0.51 0.00
10_R 69_T 0.50 0.00
28_R 41_P 0.50 0.00
31_L 27_K 0.50 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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