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OPENSEQ.org
L34 - S15
UniProt: P80340 - Q5SJ76
Length: 138
Sequences: 957
Seq/Len: 7.14
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cO 3v2d7 3v2eO 3v2f7Contact Map
2j002j00O 2j017 2j02O 2j037Contact Map
4juw4juwO 4jux7Contact Map
4kix4kix2 4kiyO 4kiz2 4kj0O 4kj12 4kj2O 4kj32 4kj4OContact Map
4kj54kj52 4kj6O 4kj72 4kj8O 4kj92 4kjaO 4kjb2 4kjcOContact Map
3uyd3uydR 3uye7 3uyfR 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1O 4gd2OContact Map
3knh3knhO 3kni7 3knjO 3knk7Contact Map
3ohc3ohcO 3ohdO 3ohj7 3ohk7Contact Map
3ohy3ohyO 3ohz7 3oi0O 3oi17Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
10_R 61_G 0.87 0.01
16_H 51_H 0.85 0.01
41_R 35_R 0.83 0.00
9_R 41_E 0.82 0.00
14_K 62_Q 0.78 0.00
14_K 32_L 0.75 0.00
30_V 9_Q 0.73 0.00
42_L 31_L 0.72 0.00
14_K 12_I 0.71 0.00
7_P 60_V 0.70 0.00
23_R 57_L 0.69 0.00
1_M 27_V 0.69 0.00
6_Q 60_V 0.69 0.00
8_N 68_R 0.68 0.00
19_R 15_F 0.68 0.00
13_A 58_M 0.67 0.00
11_K 38_R 0.67 0.00
13_A 29_V 0.64 0.00
25_P 50_H 0.64 0.00
10_R 46_H 0.63 0.00
30_V 3_I 0.61 0.00
1_M 18_F 0.61 0.00
32_K 13_Q 0.60 0.00
28_R 69_Y 0.60 0.00
26_G 58_M 0.59 0.00
12_R 65_R 0.59 0.00
32_K 89_G 0.58 0.00
8_N 60_V 0.58 0.00
26_G 89_G 0.58 0.00
36_Q 44_K 0.58 0.00
10_R 12_I 0.58 0.00
11_K 57_L 0.57 0.00
11_K 40_S 0.57 0.00
16_H 60_V 0.57 0.00
5_W 40_S 0.56 0.00
40_W 13_Q 0.56 0.00
33_R 68_R 0.55 0.00
11_K 35_R 0.55 0.00
25_P 11_V 0.55 0.00
8_N 51_H 0.55 0.00
36_Q 12_I 0.55 0.00
24_T 76_E 0.54 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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