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OPENSEQ.org
L34 - S08
UniProt: P80340 - Q5SHQ2
Length: 187
Sequences: 910
Seq/Len: 5.20
I_Prob: 0.15
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cH 3v2d7 3v2eH 3v2f7Contact Map
2j002j00H 2j017 2j02H 2j037Contact Map
4juw4juwH 4jux7Contact Map
4kix4kix2 4kiyH 4kiz2 4kj0H 4kj12 4kj2H 4kj32 4kj4HContact Map
4kj54kj52 4kj6H 4kj72 4kj8H 4kj92 4kjaH 4kjb2 4kjcHContact Map
3uyd3uydK 3uye7 3uyfK 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1H 4gd2HContact Map
3ohc3ohcH 3ohdH 3ohj7 3ohk7Contact Map
3knh3knhH 3kni7 3knjH 3knk7Contact Map
3ohy3ohyH 3ohz7 3oi0H 3oi17Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
33_R 93_V 1.14 0.15
19_R 113_S 1.12 0.14
14_K 42_E 0.88 0.06
12_R 52_D 0.87 0.06
1_M 83_I 0.86 0.06
43_T 116_K 0.81 0.05
29_K 48_Y 0.79 0.05
38_G 90_G 0.79 0.05
12_R 19_V 0.78 0.04
9_R 121_D 0.76 0.04
31_L 120_T 0.76 0.04
9_R 104_R 0.74 0.04
20_A 25_D 0.73 0.04
30_V 44_F 0.71 0.03
31_L 11_T 0.70 0.03
8_N 105_R 0.70 0.03
14_K 126_K 0.69 0.03
10_R 105_R 0.68 0.03
23_R 113_S 0.67 0.03
43_T 134_I 0.66 0.03
20_A 75_R 0.65 0.03
26_G 118_V 0.65 0.03
33_R 79_V 0.65 0.03
5_W 2_L 0.64 0.03
24_T 45_I 0.64 0.03
37_K 116_K 0.64 0.03
41_R 135_C 0.63 0.02
36_Q 127_L 0.63 0.02
14_K 40_A 0.63 0.02
32_K 50_R 0.63 0.02
30_V 11_T 0.62 0.02
23_R 67_P 0.62 0.02
10_R 118_V 0.61 0.02
31_L 18_R 0.61 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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