OPENSEQ.org
L34 - S14
UniProt: P80340 - Q5SHQ1
Length: 110
Sequences: 764
Seq/Len: 7.21
I_Prob: 0.15
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cN 3v2d7 3v2eN 3v2f7Contact Map
2j002j00N 2j017 2j02N 2j037Contact Map
4juw4juwN 4jux7Contact Map
3uyd3uydQ 3uye7 3uyfQ 3uyg7Contact Map
3ohc3ohcN 3ohdN 3ohj7 3ohk7Contact Map
3knh3knhN 3kni7 3knjN 3knk7Contact Map
3f1e3f1eN 3f1f7 3f1gN 3f1h7Contact Map
3ohy3ohyN 3ohz7 3oi0N 3oi17Contact Map
3v223v22N 3v237 3v24N 3v257Contact Map
3uz63uz6Q 3uz7Q 3uz87 3uz97Contact Map


Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
8_N 49_H 1.13 0.15
1_M 57_R 1.11 0.14
13_A 24_C 0.96 0.09
10_R 49_H 0.93 0.08
31_L 18_V 0.89 0.07
23_R 53_L 0.79 0.05
24_T 10_A 0.77 0.04
40_W 53_L 0.77 0.04
10_R 53_L 0.70 0.03
22_M 30_A 0.65 0.03
15_T 49_H 0.65 0.03
9_R 32_S 0.64 0.03
30_V 25_V 0.64 0.03
5_W 43_C 0.63 0.03
8_N 25_V 0.61 0.02
33_R 37_F 0.61 0.02
32_K 25_V 0.59 0.02
33_R 50_K 0.59 0.02
23_R 39_L 0.58 0.02
37_K 52_Q 0.58 0.02
18_F 32_S 0.57 0.02
32_K 33_V 0.56 0.02
6_Q 36_F 0.55 0.02
1_M 34_Y 0.55 0.02
11_K 59_A 0.54 0.02
30_V 30_A 0.53 0.02
15_T 57_R 0.53 0.02
38_G 23_R 0.53 0.02
14_K 44_L 0.52 0.01
29_K 34_Y 0.52 0.01
33_R 22_T 0.52 0.01
15_T 47_L 0.52 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions
(includes both intra and inter preds)

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