May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L34 - S10
UniProt: P80340 - Q5SHN7
Length: 154
Sequences: 481
Seq/Len: 3.34
I_Prob: 0.25
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cJ 3v2d7 3v2eJ 3v2f7Contact Map
2j002j00J 2j017 2j02J 2j037Contact Map
4juw4juwJ 4jux7Contact Map
4kix4kix2 4kiyJ 4kiz2 4kj0J 4kj12 4kj2J 4kj32 4kj4JContact Map
4kj54kj52 4kj6J 4kj72 4kj8J 4kj92 4kjaJ 4kjb2 4kjcJContact Map
3uyd3uydM 3uye7 3uyfM 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1J 4gd2JContact Map
3knh3knhJ 3kni7 3knjJ 3knk7Contact Map
3ohc3ohcJ 3ohdJ 3ohj7 3ohk7Contact Map
3ohy3ohyJ 3ohz7 3oi0J 3oi17Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
13_A 16_L 1.26 0.25
32_K 95_E 1.01 0.12
31_L 20_A 0.99 0.11
44_P 54_F 0.98 0.11
25_P 76_N 0.98 0.11
43_T 79_R 0.95 0.10
26_G 53_P 0.93 0.09
2_K 38_I 0.91 0.08
29_K 7_K 0.90 0.08
36_Q 16_L 0.90 0.08
15_T 50_I 0.87 0.07
10_R 62_H 0.87 0.07
16_H 82_I 0.86 0.07
10_R 96_I 0.86 0.07
11_K 16_L 0.84 0.07
19_R 75_I 0.84 0.06
31_L 93_G 0.84 0.06
25_P 78_N 0.84 0.06
13_A 12_D 0.83 0.06
37_K 14_K 0.83 0.06
24_T 92_T 0.83 0.06
11_K 15_T 0.83 0.06
44_P 65_L 0.79 0.05
11_K 50_I 0.78 0.05
25_P 82_I 0.77 0.05
3_R 47_F 0.74 0.04
16_H 11_F 0.74 0.04
3_R 90_L 0.74 0.04
14_K 100_T 0.73 0.04
15_T 72_V 0.73 0.04
5_W 20_A 0.73 0.04
15_T 14_K 0.73 0.04
26_G 78_N 0.72 0.04
14_K 64_E 0.70 0.04
15_T 47_F 0.70 0.04
11_K 21_Q 0.70 0.04
24_T 45_R 0.70 0.04
29_K 76_N 0.69 0.04
31_L 59_S 0.69 0.04
16_H 13_H 0.69 0.03
5_W 26_A 0.69 0.03
7_P 20_A 0.68 0.03
22_M 24_V 0.68 0.03
24_T 50_I 0.67 0.03
23_R 62_H 0.66 0.03
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.2927 seconds.