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OPENSEQ.org
L34 - S12
UniProt: P80340 - Q5SHN3
Length: 181
Sequences: 490
Seq/Len: 2.88
I_Prob: 0.67
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cL 3v2d7 3v2eL 3v2f7Contact Map
2j002j00L 2j017 2j02L 2j037Contact Map
4juw4juwL 4jux7Contact Map
4kix4kix2 4kiyL 4kiz2 4kj0L 4kj12 4kj2L 4kj32 4kj4LContact Map
4kj54kj52 4kj6L 4kj72 4kj8L 4kj92 4kjaL 4kjb2 4kjcLContact Map
3uyd3uydO 3uye7 3uyfO 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1L 4gd2LContact Map
3knh3knhL 3kni7 3knjL 3knk7Contact Map
3ohc3ohcL 3ohdL 3ohj7 3ohk7Contact Map
3f1e3f1eL 3f1f7 3f1gL 3f1h7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
14_K 79_V 1.48 0.67
32_K 10_K 1.03 0.26
9_R 53_A 1.02 0.25
22_M 65_A 0.99 0.23
3_R 93_V 0.96 0.21
8_N 27_A 0.96 0.21
14_K 56_R 0.94 0.19
12_R 108_K 0.92 0.18
10_R 2_P 0.90 0.17
5_W 119_T 0.89 0.16
41_R 104_A 0.89 0.16
19_R 82_I 0.89 0.16
12_R 119_T 0.88 0.15
23_R 2_P 0.86 0.14
14_K 64_T 0.86 0.14
16_H 120_K 0.84 0.13
15_T 36_V 0.83 0.13
14_K 27_A 0.83 0.13
19_R 65_A 0.82 0.12
16_H 112_K 0.81 0.12
15_T 68_P 0.80 0.11
9_R 68_P 0.80 0.11
9_R 60_G 0.79 0.11
11_K 98_V 0.79 0.11
5_W 20_K 0.78 0.10
16_H 40_V 0.78 0.10
40_W 13_E 0.77 0.10
36_Q 65_A 0.77 0.10
12_R 52_V 0.77 0.10
8_N 79_V 0.76 0.09
16_H 102_Y 0.76 0.09
9_R 5_N 0.76 0.09
25_P 13_E 0.76 0.09
11_K 21_V 0.75 0.09
12_R 9_R 0.75 0.09
25_P 26_G 0.75 0.09
8_N 36_V 0.75 0.09
43_T 49_L 0.75 0.09
5_W 8_V 0.74 0.08
13_A 101_V 0.74 0.08
43_T 104_A 0.74 0.08
22_M 101_V 0.73 0.08
28_R 81_L 0.73 0.08
32_K 13_E 0.72 0.08
15_T 101_V 0.72 0.08
16_H 105_A 0.72 0.08
31_L 14_K 0.71 0.07
5_W 49_L 0.71 0.07
9_R 97_I 0.70 0.07
26_G 27_A 0.70 0.07
36_Q 38_R 0.70 0.07
13_A 58_T 0.70 0.07
40_W 113_S 0.70 0.07
1_M 22_P 0.68 0.06
33_R 15_V 0.67 0.06
26_G 82_I 0.67 0.06
12_R 116_K 0.67 0.06
15_T 18_K 0.67 0.06
2_K 4_I 0.67 0.06
5_W 2_P 0.66 0.06
1_M 56_R 0.66 0.06
36_Q 4_I 0.66 0.06
24_T 120_K 0.65 0.06
10_R 105_A 0.65 0.06
5_W 97_I 0.65 0.05
13_A 27_A 0.64 0.05
43_T 14_K 0.64 0.05
14_K 34_C 0.64 0.05
8_N 29_F 0.63 0.05
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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