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OPENSEQ.org
L34 - S13
UniProt: P80340 - P80377
Length: 175
Sequences: 815
Seq/Len: 4.85
I_Prob: 0.06
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cM 3v2d7 3v2eM 3v2f7Contact Map
2j002j00M 2j017 2j02M 2j037Contact Map
4juw4juwM 4jux7Contact Map
4kix4kix2 4kiyM 4kiz2 4kj0M 4kj12 4kj2M 4kj32 4kj4MContact Map
4kj54kj52 4kj6M 4kj72 4kj8M 4kj92 4kjaM 4kjb2 4kjcMContact Map
3uyd3uydP 3uye7 3uyfP 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1M 4gd2MContact Map
3ohc3ohcM 3ohdM 3ohj7 3ohk7Contact Map
3knh3knhM 3kni7 3knjM 3knk7Contact Map
3ohy3ohyM 3ohz7 3oi0M 3oi17Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
12_R 83_D 1.08 0.06
32_K 95_G 0.94 0.04
14_K 48_L 0.91 0.04
19_R 55_R 0.91 0.04
10_R 11_R 0.91 0.04
40_W 49_T 0.88 0.03
10_R 84_I 0.86 0.03
7_P 111_K 0.86 0.03
3_R 90_L 0.86 0.03
5_W 111_K 0.85 0.03
37_K 95_G 0.84 0.03
38_G 7_V 0.80 0.03
36_Q 94_R 0.80 0.03
10_R 117_V 0.80 0.03
7_P 74_V 0.80 0.03
15_T 114_R 0.77 0.02
36_Q 75_A 0.72 0.02
12_R 6_G 0.72 0.02
43_T 32_E 0.71 0.02
31_L 25_I 0.71 0.02
7_P 73_E 0.70 0.02
15_T 113_P 0.69 0.02
6_Q 111_K 0.69 0.02
30_V 76_A 0.69 0.02
30_V 35_E 0.67 0.02
22_M 57_R 0.66 0.01
9_R 77_N 0.65 0.01
19_R 62_N 0.65 0.01
20_A 22_I 0.64 0.01
33_R 58_E 0.64 0.01
14_K 69_E 0.64 0.01
8_N 83_D 0.63 0.01
11_K 9_I 0.63 0.01
42_L 18_A 0.62 0.01
8_N 111_K 0.62 0.01
14_K 50_E 0.62 0.01
16_H 83_D 0.62 0.01
43_T 61_E 0.61 0.01
9_R 56_L 0.61 0.01
23_R 46_K 0.60 0.01
28_R 104_R 0.60 0.01
16_H 113_P 0.59 0.01
13_A 7_V 0.59 0.01
12_R 18_A 0.59 0.01
36_Q 35_E 0.59 0.01
20_A 33_A 0.59 0.01
11_K 18_A 0.58 0.01
9_R 110_R 0.58 0.01
5_W 110_R 0.58 0.01
31_L 59_Y 0.58 0.01
40_W 46_K 0.57 0.01
11_K 65_K 0.57 0.01
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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