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OPENSEQ.org
L34 - S11
UniProt: P80340 - P80376
Length: 178
Sequences: 625
Seq/Len: 3.63
I_Prob: 0.52
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cK 3v2d7 3v2eK 3v2f7Contact Map
2j002j00K 2j017 2j02K 2j037Contact Map
4juw4juwK 4jux7Contact Map
4kix4kix2 4kiyK 4kiz2 4kj0K 4kj12 4kj2K 4kj32 4kj4KContact Map
4kj54kj52 4kj6K 4kj72 4kj8K 4kj92 4kjaK 4kjb2 4kjcKContact Map
3uyd3uydN 3uye7 3uyfN 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1K 4gd2KContact Map
3ohc3ohcK 3ohdK 3ohj7 3ohk7Contact Map
3knh3knhK 3kni7 3knjK 3knk7Contact Map
3f1e3f1eK 3f1f7 3f1gK 3f1h7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
10_R 104_Q 1.35 0.52
37_K 95_I 1.27 0.44
16_H 53_S 1.17 0.35
1_M 71_K 0.96 0.19
15_T 9_K 0.95 0.18
31_L 71_K 0.92 0.16
22_M 66_L 0.90 0.15
8_N 93_Q 0.89 0.15
32_K 114_V 0.85 0.12
33_R 69_A 0.84 0.12
14_K 11_K 0.83 0.12
36_Q 7_K 0.82 0.11
7_P 53_S 0.81 0.11
28_R 105_V 0.81 0.11
32_K 36_D 0.80 0.10
29_K 51_K 0.79 0.10
10_R 103_L 0.78 0.09
12_R 100_A 0.77 0.09
36_Q 8_K 0.77 0.09
14_K 47_V 0.76 0.09
25_P 24_S 0.75 0.08
23_R 68_A 0.74 0.08
37_K 18_R 0.74 0.08
11_K 97_A 0.72 0.07
30_V 39_P 0.72 0.07
32_K 9_K 0.71 0.07
15_T 30_V 0.71 0.07
26_G 4_K 0.70 0.07
15_T 95_I 0.69 0.06
16_H 64_A 0.69 0.06
30_V 71_K 0.69 0.06
5_W 81_D 0.69 0.06
26_G 41_T 0.68 0.06
4_T 52_G 0.68 0.06
33_R 12_R 0.67 0.06
20_A 45_G 0.66 0.06
29_K 106_K 0.66 0.06
2_K 89_A 0.66 0.05
14_K 28_T 0.66 0.05
9_R 56_G 0.65 0.05
1_M 79_S 0.65 0.05
26_G 6_S 0.64 0.05
12_R 96_R 0.63 0.05
33_R 100_A 0.63 0.05
15_T 11_K 0.62 0.05
20_A 5_P 0.62 0.04
30_V 58_P 0.62 0.04
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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