May 4, 2021 - We are working on upgrading the webserver, some pages may not work.
OPENSEQ.org
L34 - S03
UniProt: P80340 - P80372
Length: 288
Sequences: 728
Seq/Len: 2.83
I_Prob: 0.13
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cC 3v2d7 3v2eC 3v2f7Contact Map
2j002j00C 2j017 2j02C 2j037Contact Map
4juw4juwC 4jux7Contact Map
4kix4kix2 4kiyC 4kiz2 4kj0C 4kj12 4kj2C 4kj32 4kj4CContact Map
4kj54kj52 4kj6C 4kj72 4kj8C 4kj92 4kjaC 4kjb2 4kjcCContact Map
3uyd3uydF 3uye7 3uyfF 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1C 4gd2CContact Map
3ohc3ohcC 3ohdC 3ohj7 3ohk7Contact Map
3knh3knhC 3kni7 3knjC 3knk7Contact Map
3ohy3ohyC 3ohz7 3oi0C 3oi17Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
33_R 119_R 1.24 0.13
43_T 6_H 1.04 0.07
41_R 23_Y 1.02 0.07
16_H 205_G 0.97 0.06
5_W 21_R 0.94 0.05
8_N 72_K 0.94 0.05
3_R 88_R 0.93 0.05
32_K 43_L 0.86 0.04
13_A 119_R 0.86 0.04
12_R 134_I 0.85 0.04
24_T 14_I 0.85 0.04
20_A 178_L 0.84 0.04
37_K 54_R 0.83 0.04
30_V 149_A 0.82 0.03
19_R 23_Y 0.81 0.03
43_T 90_E 0.81 0.03
9_R 29_Y 0.81 0.03
44_P 91_L 0.81 0.03
11_K 165_T 0.81 0.03
13_A 76_V 0.81 0.03
13_A 162_Q 0.81 0.03
3_R 176_H 0.81 0.03
44_P 21_R 0.79 0.03
32_K 83_R 0.77 0.03
23_R 137_A 0.77 0.03
19_R 126_R 0.77 0.03
11_K 8_I 0.76 0.03
10_R 91_L 0.75 0.03
10_R 17_D 0.75 0.03
26_G 147_K 0.74 0.02
8_N 136_Q 0.73 0.02
8_N 186_F 0.73 0.02
8_N 169_A 0.72 0.02
12_R 77_I 0.72 0.02
42_L 126_R 0.72 0.02
32_K 86_V 0.71 0.02
32_K 136_Q 0.71 0.02
14_K 210_G 0.71 0.02
19_R 188_L 0.71 0.02
24_T 134_I 0.69 0.02
33_R 111_L 0.69 0.02
8_N 110_N 0.69 0.02
33_R 5_I 0.68 0.02
30_V 192_T 0.68 0.02
4_T 170_Q 0.68 0.02
31_L 160_A 0.68 0.02
22_M 66_V 0.67 0.02
25_P 101_L 0.67 0.02
3_R 143_E 0.67 0.02
36_Q 84_I 0.66 0.02
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
Page generated in 0.4077 seconds.