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OPENSEQ.org
L34 - S02
UniProt: P80340 - P80371
Length: 305
Sequences: 819
Seq/Len: 3.00
I_Prob: 0.01
GREMLIN Results (Scaled_score > 1):

Legend: The darker and larger the blue dots, the higher strength in coevolution. Blue filled circles are GREMLIN results (Scaled_score >1). The grey/red filled circles underneath are pdb residue contacts (min distance < 5 Angstroms). The shade of the circles is based on HHsearch results which uses the overall probability and per-site alignment confidence. Inter-chain contacts in the pdb are in shades of red.
3v2c3v2cB 3v2d7 3v2eB 3v2f7Contact Map
2j002j00B 2j017 2j02B 2j037Contact Map
4juw4juwB 4jux7Contact Map
4kix4kix2 4kiyB 4kiz2 4kj0B 4kj12 4kj2B 4kj32 4kj4BContact Map
4kj54kj52 4kj6B 4kj72 4kj8B 4kj92 4kjaB 4kjb2 4kjcBContact Map
3uyd3uydE 3uye7 3uyfE 3uyg7Contact Map
4gd13r8s2 3r8t2 4gd1B 4gd2BContact Map
3knh3knhB 3kni7 3knjB 3knk7Contact Map
3ohc3ohcB 3ohdB 3ohj7 3ohk7Contact Map
3f1e3f1eB 3f1f7 3f1gB 3f1h7Contact Map


 Residue pairs sorted by strength in coevolution signal:
i j Scaled Score I_Prob
44_P 142_L 1.02 0.01
26_G 218_A 0.94 0.01
14_K 136_V 0.90 0.01
8_N 214_I 0.88 0.01
26_G 80_I 0.87 0.01
8_N 30_R 0.86 0.01
15_T 115_L 0.83 0.01
37_K 22_K 0.81 0.01
41_R 193_D 0.80 0.01
33_R 91_P 0.80 0.01
30_V 203_G 0.79 0.01
2_K 159_P 0.78 0.01
11_K 67_T 0.76 0.00
10_R 76_Q 0.75 0.00
23_R 140_H 0.74 0.00
10_R 121_L 0.74 0.00
32_K 154_L 0.73 0.00
20_A 160_D 0.72 0.00
19_R 149_L 0.72 0.00
43_T 133_K 0.72 0.00
20_A 153_R 0.71 0.00
8_N 111_R 0.70 0.00
10_R 34_A 0.70 0.00
32_K 164_V 0.68 0.00
2_K 172_I 0.68 0.00
3_R 159_P 0.68 0.00
31_L 127_I 0.68 0.00
8_N 140_H 0.67 0.00
36_Q 30_R 0.66 0.00
43_T 195_D 0.66 0.00
36_Q 163_F 0.65 0.00
Legend: The i (protein A) and j (protein B) are positions as given in the UniProt sequences. The value of the raw score is the function of the learning procedure, L2 normalization and APC (entropic) correction.

Scaled Score = raw_score/average(raw_scores)
I_Prob = P(contact | scaled_score, seq/len, top_inter_score)

Text file of predictions (includes both intra and inter preds)
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